RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.71□□□□□ -0.212e-7■■■□□ 16.7
NPHP3-ACAD11-201ENST00000471702 KIF1CO43896 1103 aaKnown RBP13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 STAU1O95793 577 aaKnown RBP13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 TAF13Q15543 124 aa13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 HEATR4Q86WZ0 1026 aa13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 KIF24Q5T7B8 1368 aa13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 F5H5T6 163 aa13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 PTGER2P43116 358 aa13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 FNTAP49354 379 aa13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 CSTF3Q12996 717 aaKnown RBP13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 EMC2Q15006 297 aa13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 ZNF512BQ96KM6 892 aaPredicted RBP13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 UNKQ9C0B0 810 aaKnown RBP13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 MIEF1Q9NQG6 463 aa13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 PITPNM2Q9BZ72 1349 aa13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 UBE2Q2LH0YL09 131 aa13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 ODC1P11926 461 aa13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 TTLL9Q3SXZ7 439 aa13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 TRMT11Q7Z4G4 463 aaKnown RBP13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 NT5DC3Q86UY8 548 aa13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 FAR2Q96K12 515 aa13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 SIK3Q9Y2K2 1263 aa13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 PIPSLA2A3N6 862 aa13.71□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CASTOR2A6NHX0 329 aa13.71□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 TGM2P21980 687 aa13.71□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 ITGA3P26006 1051 aa13.71□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 KCNJ1P48048 391 aa13.71□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 PSMC6P62333 389 aa13.71□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 GATAD2AQ86YP4 633 aa13.71□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 GPRASP2Q96D09 838 aa13.71□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 C17orf102A2RUQ5 167 aa13.71□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 DGAT1O75907 488 aa13.71□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 TYW3Q6IPR3 259 aaKnown RBP13.71□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 LRRC49Q8IUZ0 686 aa13.71□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 APOL2Q9BQE5 337 aa13.71□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 ZCCHC17Q9NP64 241 aaKnown RBP13.71□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CTNNAL1Q9UBT7 734 aa13.71□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 VPS28Q9UK41 221 aa13.71□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CCDC189A1A4V9 331 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 AP3B1O00203 1094 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 PSMD14O00487 310 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 GRIN3BO60391 1043 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 RAG1P15918 1043 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 HNRNPH2P55795 449 aaKnown RBP13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 PPP1R18Q6NYC8 613 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 LONP2Q86WA8 852 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 TFB1MQ8WVM0 346 aaKnown RBP13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 APEX2Q9UBZ4 518 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 FOXN1O15353 648 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 KLRC2P26717 231 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 BYSLQ13895 437 aaKnown RBP13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 GRM4Q14833 912 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 ZNF284Q2VY69 593 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 REEP2Q9BRK0 252 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 GOLPH3Q9H4A6 298 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 SPATA2Q9UM82 520 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 PTPRKQ15262 1439 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 ATP7AQ04656 1500 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 URODP06132 367 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 SERPINB5P36952 375 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 USP11P51784 963 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 EFEMP1Q12805 493 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 MRPL48Q96GC5 212 aaKnown RBP13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 COLEC11Q9BWP8 271 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CSDE1O75534 798 aaKnown RBP13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 ZNF682O95780 498 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 ALBP02768 609 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 HNMTP50135 292 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 AP3M2P53677 418 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 SFSWAPQ12872 951 aaKnown RBP13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 LAMB3Q13751 1172 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 NFIXQ14938 502 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 UGT3A1Q6NUS8 523 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 KIF2CQ99661 725 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 TARS2Q9BW92 718 aaKnown RBP13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 UBP1Q9NZI7 540 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 BLOC1S6Q9UL45 172 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CBX4O00257 560 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 MAGEB2O15479 319 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CST8O60676 142 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 SMNDC1O75940 238 aaKnown RBP eCLIP13.7□□□□□ -0.225e-6■□□□□ 10.8
NPHP3-ACAD11-201ENST00000471702 SPRP35270 261 aaPredicted RBP13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 PTK6Q13882 451 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 PDK1Q15118 436 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 EPHA10Q5JZY3 1008 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 ZKSCAN4Q969J2 545 aaPredicted RBP13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CHURC1-FNTBB4DL54 471 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 TFE3P19532 575 aaPredicted RBP13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CDC42EP1Q00587 391 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 MMRN1Q13201 1228 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 C2CD6Q53TS8 623 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 PGLYRP2Q96PD5 576 aa13.7□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 ZMYND11Q15326 602 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CALML6Q8TD86 181 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 IL17RAQ96F46 866 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 SH3BP4Q9P0V3 963 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 PDZK1P1A8MUH7 402 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 CHI3L2Q15782 390 aa13.69□□□□□ -0.22
NPHP3-ACAD11-201ENST00000471702 SH2D3CQ8N5H7 860 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms