RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 PRR5-ARHGAP8B1AHC4 643 aa18.66■□□□□ 0.58
COL7A1-206ENST00000466591 CALUO43852 315 aaPredicted RBP18.66■□□□□ 0.58
COL7A1-206ENST00000466591 TADA3O75528 432 aa18.66■□□□□ 0.58
COL7A1-206ENST00000466591 NFATC1O95644 943 aa18.66■□□□□ 0.58
COL7A1-206ENST00000466591 CCDC192P0DO97 292 aa18.66■□□□□ 0.58
COL7A1-206ENST00000466591 SYKP43405 635 aa18.66■□□□□ 0.58
COL7A1-206ENST00000466591 CASP4P49662 377 aa18.66■□□□□ 0.58
COL7A1-206ENST00000466591 ARHGAP8P85298 464 aa18.66■□□□□ 0.58
COL7A1-206ENST00000466591 NCOA4Q13772 614 aa18.66■□□□□ 0.58
COL7A1-206ENST00000466591 KMT5BQ4FZB7 885 aa18.66■□□□□ 0.58
COL7A1-206ENST00000466591 C12orf56Q8IXR9 622 aa18.66■□□□□ 0.58
COL7A1-206ENST00000466591 CD101Q93033 1021 aa18.66■□□□□ 0.58
COL7A1-206ENST00000466591 IMPG2Q9BZV3 1241 aa18.66■□□□□ 0.58
COL7A1-206ENST00000466591 DNAI2Q9GZS0 605 aa18.66■□□□□ 0.58
COL7A1-206ENST00000466591 NACA2Q9H009 215 aa18.66■□□□□ 0.58
COL7A1-206ENST00000466591 CFAP54Q96N23 3096 aa18.66■□□□□ 0.58
COL7A1-206ENST00000466591 F5P12259 2224 aa18.66■□□□□ 0.58
COL7A1-206ENST00000466591 VPS13AQ96RL7 3174 aa18.65■□□□□ 0.58
COL7A1-206ENST00000466591 RNF40O75150 1001 aa18.65■□□□□ 0.58
COL7A1-206ENST00000466591 MYL1P05976 194 aa18.65■□□□□ 0.58
COL7A1-206ENST00000466591 FAM163BP0C2L3 166 aa18.65■□□□□ 0.58
COL7A1-206ENST00000466591 GJA4P35212 333 aa18.65■□□□□ 0.58
COL7A1-206ENST00000466591 EHHADHQ08426 723 aa18.65■□□□□ 0.58
COL7A1-206ENST00000466591 SPEM2Q0P670 501 aa18.65■□□□□ 0.58
COL7A1-206ENST00000466591 ZNF77Q15935 545 aa18.65■□□□□ 0.58
COL7A1-206ENST00000466591 FBXO43Q4G163 708 aa18.65■□□□□ 0.58
COL7A1-206ENST00000466591 TMEM196Q5HYL7 178 aa18.65■□□□□ 0.58
COL7A1-206ENST00000466591 CCDC150Q8NCX0 1101 aa18.65■□□□□ 0.58
COL7A1-206ENST00000466591 CCDC26Q8TAB7 109 aa18.65■□□□□ 0.58
COL7A1-206ENST00000466591 C8orf48Q96LL4 319 aa18.65■□□□□ 0.58
COL7A1-206ENST00000466591 SLC22A12Q96S37 553 aa18.65■□□□□ 0.58
COL7A1-206ENST00000466591 DPEP3Q9H4B8 488 aa18.65■□□□□ 0.58
COL7A1-206ENST00000466591 ARHGAP26Q9UNA1 814 aa18.65■□□□□ 0.58
COL7A1-206ENST00000466591 TRDMT1O14717 391 aaKnown RBP18.64■□□□□ 0.57
COL7A1-206ENST00000466591 ACTN4O43707 911 aaKnown RBP18.64■□□□□ 0.57
COL7A1-206ENST00000466591 RTN3O95197 1032 aaPredicted RBP18.64■□□□□ 0.57
COL7A1-206ENST00000466591 PAPSS2O95340 614 aaPredicted RBP18.64■□□□□ 0.57
COL7A1-206ENST00000466591 EGFP01133 1207 aa18.64■□□□□ 0.57
COL7A1-206ENST00000466591 NR3C1P04150 777 aa18.64■□□□□ 0.57
COL7A1-206ENST00000466591 RETP07949 1114 aa18.64■□□□□ 0.57
COL7A1-206ENST00000466591 TDGF1P13385 188 aa18.64■□□□□ 0.57
COL7A1-206ENST00000466591 PFKLP17858 780 aa18.64■□□□□ 0.57
COL7A1-206ENST00000466591 CMA1P23946 247 aa18.64■□□□□ 0.57
COL7A1-206ENST00000466591 PIK3CAP42336 1068 aa18.64■□□□□ 0.57
COL7A1-206ENST00000466591 RAP1GAPP47736 663 aa18.64■□□□□ 0.57
COL7A1-206ENST00000466591 GALK1P51570 392 aa18.64■□□□□ 0.57
COL7A1-206ENST00000466591 DMWDQ09019 674 aa18.64■□□□□ 0.57
COL7A1-206ENST00000466591 STK4Q13043 487 aa18.64■□□□□ 0.57
COL7A1-206ENST00000466591 USP4Q13107 963 aa18.64■□□□□ 0.57
COL7A1-206ENST00000466591 SRSF5Q13243 272 aaKnown RBP18.64■□□□□ 0.57
COL7A1-206ENST00000466591 FSTL4Q6MZW2 842 aa18.64■□□□□ 0.57
COL7A1-206ENST00000466591 NUP93Q8N1F7 819 aa18.64■□□□□ 0.57
COL7A1-206ENST00000466591 ZNF518BQ9C0D4 1074 aa18.64■□□□□ 0.57
COL7A1-206ENST00000466591 SMYD3Q9H7B4 428 aa18.64■□□□□ 0.57
COL7A1-206ENST00000466591 SMPD4Q9NXE4 827 aa18.64■□□□□ 0.57
COL7A1-206ENST00000466591 KIF26AQ9ULI4 1882 aaPredicted RBP18.64■□□□□ 0.57
COL7A1-206ENST00000466591 LRRIQ3A6PVS8 624 aaPredicted RBP18.63■□□□□ 0.57
COL7A1-206ENST00000466591 CLDN5O00501 218 aa18.63■□□□□ 0.57
COL7A1-206ENST00000466591 SLC9A3R1O14745 358 aaPredicted RBP18.63■□□□□ 0.57
COL7A1-206ENST00000466591 STAU1O95793 577 aaKnown RBP18.63■□□□□ 0.57
COL7A1-206ENST00000466591 RPN1P04843 607 aaKnown RBP18.63■□□□□ 0.57
COL7A1-206ENST00000466591 MBL2P11226 248 aaPredicted RBP18.63■□□□□ 0.57
COL7A1-206ENST00000466591 KRT13P13646 458 aa18.63■□□□□ 0.57
COL7A1-206ENST00000466591 YWHAQP27348 245 aa18.63■□□□□ 0.57
COL7A1-206ENST00000466591 PXNP49023 591 aaPredicted RBP18.63■□□□□ 0.57
COL7A1-206ENST00000466591 USP46P62068 366 aa18.63■□□□□ 0.57
COL7A1-206ENST00000466591 NOP14P78316 857 aaKnown RBP18.63■□□□□ 0.57
COL7A1-206ENST00000466591 TAF10Q12962 218 aa18.63■□□□□ 0.57
COL7A1-206ENST00000466591 SGSM1Q2NKQ1 1148 aa18.63■□□□□ 0.57
COL7A1-206ENST00000466591 LIMS2Q7Z4I7 341 aa18.63■□□□□ 0.57
COL7A1-206ENST00000466591 WDR5BQ86VZ2 330 aa18.63■□□□□ 0.57
COL7A1-206ENST00000466591 KIAA0895Q8NCT3 520 aa18.63■□□□□ 0.57
COL7A1-206ENST00000466591 PDZD8Q8NEN9 1154 aa18.63■□□□□ 0.57
COL7A1-206ENST00000466591 PARD3BQ8TEW8 1205 aa18.63■□□□□ 0.57
COL7A1-206ENST00000466591 ZNF516Q92618 1163 aa18.63■□□□□ 0.57
COL7A1-206ENST00000466591 FBXO32Q969P5 355 aa18.63■□□□□ 0.57
COL7A1-206ENST00000466591 ACDQ96AP0 544 aa18.63■□□□□ 0.57
COL7A1-206ENST00000466591 CHFRQ96EP1 664 aa18.63■□□□□ 0.57
COL7A1-206ENST00000466591 OBSL1O75147 1896 aa18.63■□□□□ 0.57
COL7A1-206ENST00000466591 OTOL1A6NHN0 477 aaPredicted RBP18.62■□□□□ 0.57
COL7A1-206ENST00000466591 K7ESF4 209 aa18.62■□□□□ 0.57
COL7A1-206ENST00000466591 LEFTY2O00292 366 aa18.62■□□□□ 0.57
COL7A1-206ENST00000466591 PDXKO00764 312 aa18.62■□□□□ 0.57
COL7A1-206ENST00000466591 RPP40O75818 363 aaKnown RBP18.62■□□□□ 0.57
COL7A1-206ENST00000466591 CDH8P55286 799 aa18.62■□□□□ 0.57
COL7A1-206ENST00000466591 EML3Q32P44 896 aa18.62■□□□□ 0.57
COL7A1-206ENST00000466591 DDX42Q86XP3 938 aaKnown RBP eCLIP18.62■□□□□ 0.57
COL7A1-206ENST00000466591 RPLP0P6Q8NHW5 317 aa18.62■□□□□ 0.57
COL7A1-206ENST00000466591 SMARCD1Q96GM5 515 aa18.62■□□□□ 0.57
COL7A1-206ENST00000466591 B3GNT5Q9BYG0 378 aa18.62■□□□□ 0.57
COL7A1-206ENST00000466591 SCAND2PQ9GZW5 306 aaPredicted RBP18.62■□□□□ 0.57
COL7A1-206ENST00000466591 DMAP1Q9NPF5 467 aaPredicted RBP18.62■□□□□ 0.57
COL7A1-206ENST00000466591 GCNT4Q9P109 453 aa18.62■□□□□ 0.57
COL7A1-206ENST00000466591 CPQQ9Y646 472 aa18.62■□□□□ 0.57
COL7A1-206ENST00000466591 EP300Q09472 2414 aaPredicted RBP18.61■□□□□ 0.57
COL7A1-206ENST00000466591 GVINP1Q7Z2Y8 2422 aa18.61■□□□□ 0.57
COL7A1-206ENST00000466591 DENND4CQ5VZ89 1909 aa18.61■□□□□ 0.57
COL7A1-206ENST00000466591 ZNF840PA6NDX5 716 aa18.61■□□□□ 0.57
COL7A1-206ENST00000466591 HRO43593 1189 aa18.61■□□□□ 0.57
COL7A1-206ENST00000466591 KLRC4O43908 158 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms