RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 CDH4P55283 916 aa5.4□□□□□ -1.54
CSMD3-204ENST00000455883 NFX1Q12986 1120 aaKnown RBP5.4□□□□□ -1.54
CSMD3-204ENST00000455883 NDUFAF6Q330K2 333 aa5.4□□□□□ -1.54
CSMD3-204ENST00000455883 CCNI2Q6ZMN8 369 aaPredicted RBP5.4□□□□□ -1.54
CSMD3-204ENST00000455883 STK40Q8N2I9 435 aa5.4□□□□□ -1.54
CSMD3-204ENST00000455883 MYDGFQ969H8 173 aa5.4□□□□□ -1.54
CSMD3-204ENST00000455883 DEPDC7Q96QD5 511 aa5.4□□□□□ -1.54
CSMD3-204ENST00000455883 SLITRK2Q9H156 845 aa5.4□□□□□ -1.54
CSMD3-204ENST00000455883 HMGXB4Q9UGU5 601 aa5.4□□□□□ -1.54
CSMD3-204ENST00000455883 USP1O94782 785 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 PARP6Q2NL67 630 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 FAM98BQ52LJ0 330 aaKnown RBP5.4□□□□□ -1.55
CSMD3-204ENST00000455883 C8orf58Q8NAV2 365 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 BORCS5Q969J3 196 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 PAGE5Q96GU1 130 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 ELAC2Q9BQ52 826 aaKnown RBP5.4□□□□□ -1.55
CSMD3-204ENST00000455883 MKS1Q9NXB0 559 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 APEX2Q9UBZ4 518 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 WDR37Q9Y2I8 494 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 PRMT5O14744 637 aaPredicted RBP5.4□□□□□ -1.55
CSMD3-204ENST00000455883 MDM4O15151 490 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 CYP2C18P33260 490 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 VCPP55072 806 aaKnown RBP5.4□□□□□ -1.55
CSMD3-204ENST00000455883 KIF22Q14807 665 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 STXBP2Q15833 593 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 PFKFB3Q16875 520 aaPredicted RBP5.4□□□□□ -1.55
CSMD3-204ENST00000455883 DCAF6Q58WW2 860 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 C10orf62Q5T681 223 aaPredicted RBP5.4□□□□□ -1.55
CSMD3-204ENST00000455883 RBM43Q6ZSC3 357 aaKnown RBP5.4□□□□□ -1.55
CSMD3-204ENST00000455883 SPAG16Q8N0X2 631 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 EXD1Q8NHP7 514 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 ZNF473Q8WTR7 871 aaKnown RBP5.4□□□□□ -1.55
CSMD3-204ENST00000455883 ZNF577Q9BSK1 485 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 USP44Q9H0E7 712 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 MANSC1Q9H8J5 431 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 SERTAD1Q9UHV2 236 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 CPDO75976 1380 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 PALMO75781 387 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 RPN2P04844 631 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 RPS8P62241 208 aaKnown RBP5.4□□□□□ -1.55
CSMD3-204ENST00000455883 ADCY1Q08828 1119 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 SEL1L3Q68CR1 1132 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 AAGABQ6PD74 315 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 MYCBPAPQ8TBZ2 947 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 SMYD2Q9NRG4 433 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 TLR7Q9NYK1 1049 aaKnown RBP5.4□□□□□ -1.55
CSMD3-204ENST00000455883 MKLN1Q9UL63 735 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 TTLL3Q9Y4R7 772 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 ZBBXA8MT70 800 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 DNALI1O14645 258 aaPredicted RBP5.4□□□□□ -1.55
CSMD3-204ENST00000455883 PLA2G4BP0C869 781 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 MAPTP10636 758 aaKnown RBP5.4□□□□□ -1.55
CSMD3-204ENST00000455883 PLCG1P19174 1290 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 GPS1Q13098 491 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 TRIP10Q15642 601 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 CLEC16AQ2KHT3 1053 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 RGS9BPQ6ZS82 235 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 ELMOD1Q8N336 334 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 FAXDC2Q96IV6 333 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 PNPLA8Q9NP80 782 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 COMMD8Q9NX08 183 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 ATXN10Q9UBB4 475 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 RPS6KA6Q9UK32 745 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 MAN1B1Q9UKM7 699 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 FAM92AA1XBS5 289 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 ERN1O75460 977 aaKnown RBP5.4□□□□□ -1.55
CSMD3-204ENST00000455883 PGK2P07205 417 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 RFC5P40937 340 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 RWDD4Q6NW29 188 aaKnown RBP5.4□□□□□ -1.55
CSMD3-204ENST00000455883 EID3Q8N140 333 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 RBM46Q8TBY0 533 aaKnown RBP5.4□□□□□ -1.55
CSMD3-204ENST00000455883 RDH11Q8TC12 318 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 ERP27Q96DN0 273 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 SLC25A23Q9BV35 468 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 PALD1Q9ULE6 856 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 AK5Q9Y6K8 562 aa5.4□□□□□ -1.55
CSMD3-204ENST00000455883 ZBTB5O15062 677 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 NTRK1P04629 796 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 ZCCHC18P0CG32 403 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 MAPK8P45983 427 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 RNASE9P60153 205 aaKnown RBP5.39□□□□□ -1.55
CSMD3-204ENST00000455883 PHKG1Q16816 387 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 BNC2Q6ZN30 1099 aaPredicted RBP5.39□□□□□ -1.55
CSMD3-204ENST00000455883 ZCCHC7Q8N3Z6 543 aaKnown RBP5.39□□□□□ -1.55
CSMD3-204ENST00000455883 TEKT4Q8WW24 435 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 VPS11Q9H270 941 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 SYTL2Q9HCH5 934 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 TMEM216Q9P0N5 145 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 PRPF19Q9UMS4 504 aaKnown RBP5.39□□□□□ -1.55
CSMD3-204ENST00000455883 CARD8Q9Y2G2 431 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 AGLP35573 1532 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 SRP72O76094 671 aaKnown RBP5.39□□□□□ -1.55
CSMD3-204ENST00000455883 FBXO21O94952 628 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 TGDSO95455 350 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 GUCA1CO95843 209 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 CD4P01730 458 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 GUCA1AP43080 201 aaPredicted RBP5.39□□□□□ -1.55
CSMD3-204ENST00000455883 GPD2P43304 727 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 PDCLQ13371 301 aa5.39□□□□□ -1.55
CSMD3-204ENST00000455883 E2F4Q16254 413 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms