RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 WSCD1Q658N2 575 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 CCNI2Q6ZMN8 369 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 DDX42Q86XP3 938 aaKnown RBP eCLIP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 SCUBE3Q8IX30 993 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 MMGT1Q8N4V1 131 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 EDEM1Q92611 657 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 DMAP1Q9NPF5 467 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 STK38LQ9Y2H1 464 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 ZMYM2Q9UBW7 1377 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 CCDC78A2IDD5 438 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 F5H5T6 163 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 SEPT4O43236 478 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 GRM5P41594 1212 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 KRT33BQ14525 404 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 STAT4Q14765 748 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 NUGGCQ68CJ6 796 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 SPATS2Q86XZ4 545 aaKnown RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 C12orf56Q8IXR9 622 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 SLAIN1Q8ND83 568 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 ATG4AQ8WYN0 398 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 ALKBH8Q96BT7 664 aaKnown RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 MBOAT7Q96N66 472 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 TXNRD2Q9NNW7 524 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 ZC3H7BQ9UGR2 993 aaKnown RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 SLC45A1Q9Y2W3 748 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 ZNF536O15090 1300 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 UBR2Q8IWV8 1755 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 H0Y626 953 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 DARSP14868 501 aaKnown RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 BRAFP15056 766 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 PRLRP16471 622 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 FNTAP49354 379 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 TMPRSS15P98073 1019 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 NSUN2Q08J23 767 aaKnown RBP eCLIP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 ZNF177Q13360 481 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 CDH18Q13634 790 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 MMEL1Q495T6 779 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 FRA10AC1Q70Z53 315 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 EPS8L1Q8TE68 723 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 KRT35Q92764 455 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 ELOVL4Q9GZR5 314 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 FBXO44Q9H4M3 255 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 ACP6Q9NPH0 428 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 FAM105AQ9NUU6 356 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 A0A0B4J269 797 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 EPHB6O15197 1021 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 BDNFP23560 247 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 TYK2P29597 1187 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 STIP1P31948 543 aaKnown RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 ARL2P36404 184 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 CARSP49589 748 aaKnown RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 ITGA8P53708 1063 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 TPD52P55327 224 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 STX1BP61266 288 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 POU5F1BQ06416 359 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 MTM1Q13496 603 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 SLC39A12Q504Y0 691 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 NOMO2Q5JPE7 1267 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 MEI1Q5TIA1 1274 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 PAPD7Q5XG87 772 aaKnown RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 IPMKQ8NFU5 416 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 EXD1Q8NHP7 514 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 HELQQ8TDG4 1101 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 ATXN7L3BQ96GX2 97 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 MFSD14AQ96MC6 490 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 NXF3Q9H4D5 531 aaKnown RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 TLR8Q9NR97 1041 aaKnown RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 M0R2N6 131 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 TOMM70O94826 608 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 YWHAZP63104 245 aaKnown RBP7.71□□□□□ -1.17
SYNE1-213ENST00000448038 RCN2Q14257 317 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 C11orf63Q6NUN7 778 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 UNC93AQ86WB7 457 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 ZDHHC17Q8IUH5 632 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 CYTH2Q99418 400 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 SLC13A1Q9BZW2 595 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 GANQ9H2C0 597 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 GLI3P10071 1580 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 CALCAP01258 141 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 TWF1Q12792 350 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 IFT88Q13099 833 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 SPOCD1Q6ZMY3 1216 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 TRIM67Q6ZTA4 783 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 TRMT10CQ7L0Y3 403 aaKnown RBP7.71□□□□□ -1.17
SYNE1-213ENST00000448038 TMEM199Q8N511 208 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 PPP1R2P1Q96PQ5 205 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 MLXIPLQ9NP71 852 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 ARHGAP28Q9P2N2 729 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 PCDHB8Q9UN66 801 aa7.71□□□□□ -1.17
SYNE1-213ENST00000448038 HSPA4LO95757 839 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 PTPN1P18031 435 aaKnown RBP7.71□□□□□ -1.18
SYNE1-213ENST00000448038 PRKCIP41743 596 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 GYS2P54840 703 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 COPS2P61201 443 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 MCL1Q07820 350 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 CCL14Q16627 93 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 C4orf22Q6V702 233 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 EFHBQ8N7U6 833 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 ZBTB10Q96DT7 871 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms