RNA–Protein interactions for RNA: ENST00000442232.1

TTC28-203, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 2

Gene TTC28, Length 499 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-203ENST00000442232 WDR5BQ86VZ2 330 aa12.56□□□□□ -0.4
TTC28-203ENST00000442232 CCDC26Q8TAB7 109 aa12.56□□□□□ -0.4
TTC28-203ENST00000442232 SH3RF2Q8TEC5 729 aa12.56□□□□□ -0.4
TTC28-203ENST00000442232 CCDC47Q96A33 483 aaKnown RBP12.56□□□□□ -0.4
TTC28-203ENST00000442232 ACDQ96AP0 544 aa12.56□□□□□ -0.4
TTC28-203ENST00000442232 PCED1BQ96HM7 432 aa12.56□□□□□ -0.4
TTC28-203ENST00000442232 CYP2S1Q96SQ9 504 aa12.56□□□□□ -0.4
TTC28-203ENST00000442232 ECT2Q9H8V3 914 aa12.56□□□□□ -0.4
TTC28-203ENST00000442232 CRTAC1Q9NQ79 661 aa12.56□□□□□ -0.4
TTC28-203ENST00000442232 DLL3Q9NYJ7 618 aa12.56□□□□□ -0.4
TTC28-203ENST00000442232 NXF1Q9UBU9 619 aaKnown RBP12.56□□□□□ -0.4
TTC28-203ENST00000442232 C2orf78A6NCI8 922 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 F8VP50 259 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 RNF40O75150 1001 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 KIF20AO95235 890 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 STAU1O95793 577 aaKnown RBP12.55□□□□□ -0.4
TTC28-203ENST00000442232 ABL1P00519 1130 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 CCDC192P0DO97 292 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 PTPN1P18031 435 aaKnown RBP12.55□□□□□ -0.4
TTC28-203ENST00000442232 CASP1P29466 404 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 GJA4P35212 333 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 EHHADHQ08426 723 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 DMWDQ09019 674 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 SPEM2Q0P670 501 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 IFRD2Q12894 506 aaPredicted RBP12.55□□□□□ -0.4
TTC28-203ENST00000442232 PSMD2Q13200 908 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 CUL4BQ13620 913 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 SCARA3Q6AZY7 606 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 FSTL4Q6MZW2 842 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 C12orf56Q8IXR9 622 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 SPRYD3Q8NCJ5 442 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 CD101Q93033 1021 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 C8orf48Q96LL4 319 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 SLITRK1Q96PX8 696 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 MRPL45Q9BRJ2 306 aaKnown RBP12.55□□□□□ -0.4
TTC28-203ENST00000442232 MED10Q9BTT4 135 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 USP25Q9UHP3 1055 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 SERTAD1Q9UHV2 236 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 ARHGAP26Q9UNA1 814 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 WNT6Q9Y6F9 365 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 MYO16Q9Y6X6 1858 aa12.55□□□□□ -0.4
TTC28-203ENST00000442232 KIAA1549LQ6ZVL6 1849 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 SLC9A3R1O14745 358 aaPredicted RBP12.54□□□□□ -0.4
TTC28-203ENST00000442232 HRO43593 1189 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 RPP40O75818 363 aaKnown RBP12.54□□□□□ -0.4
TTC28-203ENST00000442232 RTN3O95197 1032 aaPredicted RBP12.54□□□□□ -0.4
TTC28-203ENST00000442232 CST3P01034 146 aaPredicted RBP12.54□□□□□ -0.4
TTC28-203ENST00000442232 EGFP01133 1207 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 SLFN14P0C7P3 912 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 TCF3P15923 654 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 MYL6P60660 151 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 NOP14P78316 857 aaKnown RBP12.54□□□□□ -0.4
TTC28-203ENST00000442232 DNM1Q05193 864 aaKnown RBP12.54□□□□□ -0.4
TTC28-203ENST00000442232 SRSF5Q13243 272 aaKnown RBP12.54□□□□□ -0.4
TTC28-203ENST00000442232 ZNF667Q5HYK9 610 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 WDR44Q5JSH3 913 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 DDX42Q86XP3 938 aaKnown RBP eCLIP12.54□□□□□ -0.4
TTC28-203ENST00000442232 GRAMD1CQ8IYS0 662 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 B3GALNT2Q8NCR0 500 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 PDZD8Q8NEN9 1154 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 RIN3Q8TB24 985 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 NETO1Q8TDF5 533 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 TNIP3Q96KP6 325 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 SLC22A12Q96S37 553 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 RTKNQ9BST9 563 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 TTLL2Q9BWV7 592 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 PARD6AQ9NPB6 346 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 GCNT4Q9P109 453 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 FRMD4BQ9Y2L6 1034 aa12.54□□□□□ -0.4
TTC28-203ENST00000442232 CCDC163A0A0D9SF12 145 aa12.53□□□□□ -0.4
TTC28-203ENST00000442232 OTOL1A6NHN0 477 aaPredicted RBP12.53□□□□□ -0.4
TTC28-203ENST00000442232 CALUO43852 315 aaPredicted RBP12.53□□□□□ -0.4
TTC28-203ENST00000442232 MYL1P05976 194 aa12.53□□□□□ -0.4
TTC28-203ENST00000442232 GALK1P51570 392 aa12.53□□□□□ -0.4
TTC28-203ENST00000442232 KRT85P78386 507 aa12.53□□□□□ -0.4
TTC28-203ENST00000442232 NCOA4Q13772 614 aa12.53□□□□□ -0.4
TTC28-203ENST00000442232 EML3Q32P44 896 aa12.53□□□□□ -0.4
TTC28-203ENST00000442232 SCARA5Q6ZMJ2 495 aa12.53□□□□□ -0.4
TTC28-203ENST00000442232 CACNA2D4Q7Z3S7 1137 aa12.53□□□□□ -0.4
TTC28-203ENST00000442232 CAMKK1Q8N5S9 505 aa12.53□□□□□ -0.4
TTC28-203ENST00000442232 RPLP0P6Q8NHW5 317 aa12.53□□□□□ -0.4
TTC28-203ENST00000442232 GAB3Q8WWW8 586 aa12.53□□□□□ -0.4
TTC28-203ENST00000442232 FBXO32Q969P5 355 aa12.53□□□□□ -0.4
TTC28-203ENST00000442232 CHFRQ96EP1 664 aa12.53□□□□□ -0.4
TTC28-203ENST00000442232 SPATA32Q96LK8 384 aa12.53□□□□□ -0.4
TTC28-203ENST00000442232 DPEP3Q9H4B8 488 aa12.53□□□□□ -0.4
TTC28-203ENST00000442232 SMYD3Q9H7B4 428 aa12.53□□□□□ -0.4
TTC28-203ENST00000442232 SEMA4GQ9NTN9 838 aa12.53□□□□□ -0.4
TTC28-203ENST00000442232 LRRIQ3A6PVS8 624 aaPredicted RBP12.52□□□□□ -0.41
TTC28-203ENST00000442232 LEFTY2O00292 366 aa12.52□□□□□ -0.41
TTC28-203ENST00000442232 ACTN4O43707 911 aaKnown RBP12.52□□□□□ -0.41
TTC28-203ENST00000442232 MBL2P11226 248 aaPredicted RBP12.52□□□□□ -0.41
TTC28-203ENST00000442232 PFKFB1P16118 471 aa12.52□□□□□ -0.41
TTC28-203ENST00000442232 YWHAQP27348 245 aa12.52□□□□□ -0.41
TTC28-203ENST00000442232 PXNP49023 591 aaPredicted RBP12.52□□□□□ -0.41
TTC28-203ENST00000442232 CASP4P49662 377 aa12.52□□□□□ -0.41
TTC28-203ENST00000442232 USP46P62068 366 aa12.52□□□□□ -0.41
TTC28-203ENST00000442232 CSRP2Q16527 193 aa12.52□□□□□ -0.41
TTC28-203ENST00000442232 PKN3Q6P5Z2 889 aa12.52□□□□□ -0.41
TTC28-203ENST00000442232 PRR23CQ6ZRP0 262 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms