RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 C4orf33Q8N1A6 199 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 M0QYT0 321 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 STRNO43815 780 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 SERPINI2O75830 405 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 CTCFP49711 727 aaPredicted RBP12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 KCNK10P57789 538 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 ZBTB39O15060 712 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 TBX3O15119 743 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 H2AFYO75367 372 aaKnown RBP12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 ENDOD1O94919 500 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 BACE1P56817 501 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 PLOD1Q02809 727 aaPredicted RBP12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 MROH9Q5TGP6 573 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 SPATA4Q8NEY3 305 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 PALMDQ9NP74 551 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 ADARB2Q9NS39 739 aaKnown RBP12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 MYOM1P52179 1685 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 VPS26AO75436 327 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 PTPN7P35236 360 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 PTGER2P43116 358 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 SERPINB9P50453 376 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 ITPK1Q13572 414 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 MTF1Q14872 753 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 LAMA4Q16363 1823 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 UBE2Q2LH0YL09 131 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 TRIP4Q15650 581 aaPredicted RBP12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 POTEAQ6S8J7 498 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 SCN2AQ99250 2005 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 MYL4P12829 197 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 KLRK1P26718 216 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 EPHB2P29323 1055 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 GUCA1AP43080 201 aaPredicted RBP12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 GALCP54803 685 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 CNTN1Q12860 1018 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 ADGRE3Q9BY15 652 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 BFSP2Q13515 415 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 PGS1Q32NB8 556 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 ZNF438Q7Z4V0 828 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 CNDP1Q96KN2 507 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 EMILIN2Q9BXX0 1053 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 FAM208AQ9UK61 1670 aaKnown RBP12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 CHN1P15882 459 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 CDC16Q13042 620 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 E2F4Q16254 413 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 ACOT1Q86TX2 421 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 KIRREL3Q8IZU9 778 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 STARD7Q9NQZ5 370 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 EDRF1Q3B7T1 1238 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 IRAK1BP1Q5VVH5 260 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 RPRD1AQ96P16 312 aaPredicted RBP12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 MROH8Q9H579 483 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 THG1LQ9NWX6 298 aaKnown RBP12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 NYAP2Q9P242 653 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 CNTNAP2Q9UHC6 1331 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 EVPLLA8MZ36 301 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 TFDP3Q5H9I0 405 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 OLFM3Q96PB7 478 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 CLPBQ9H078 707 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 JMJD4Q9H9V9 463 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 DBR1Q9UK59 544 aaKnown RBP12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 RASSF9O75901 435 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 ANXA9O76027 345 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 DDX39BQ13838 428 aaKnown RBP12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 MFSD1Q9H3U5 465 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 RIC8BQ9NVN3 520 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 ADGRG1Q9Y653 693 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 RASA1P20936 1047 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 PSMA4P25789 261 aaKnown RBP12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 TTLL9Q3SXZ7 439 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 OTOAQ7RTW8 1153 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 PRUNE1Q86TP1 453 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 KRT78Q8N1N4 520 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 KCTD10Q9H3F6 313 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 RRAGCQ9HB90 399 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 KRT84Q9NSB2 600 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 USP27XA6NNY8 438 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 RGL2O15211 777 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 BCAT1P54687 386 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 TRIM60Q495X7 471 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 BARGINQ6ZT62 677 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 ZNF614Q8N883 585 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 ZNF669Q96BR6 464 aaPredicted RBP12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 AHCYL2Q96HN2 611 aaKnown RBP12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 PRPF18Q99633 342 aaKnown RBP12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 ADAM21Q9UKJ8 722 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 APOA1P02647 267 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 E4F1Q66K89 784 aaPredicted RBP12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 RIN2Q8WYP3 895 aaPredicted RBP12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 GID8Q9NWU2 228 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 BLOC1S6Q9UL45 172 aa12.49□□□□□ -0.41
CCDC88A-207ENST00000436346 GCLCP48506 637 aaPredicted RBP12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 ZNF677Q86XU0 584 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 PARP9Q8IXQ6 854 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 FAR2Q96K12 515 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 IMPAD1Q9NX62 359 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 MTFR1Q15390 333 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 INPP5DQ92835 1189 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 EPN3Q9H201 632 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms