RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 CDR1P51861 262 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 CACNA2D1P54289 1103 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 SNX16P57768 344 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 NOMO3P69849 1222 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 PLD1Q13393 1074 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 SLC18A3Q16572 532 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 ACAD10Q6JQN1 1059 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 PMF1Q6P1K2 205 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 ELMSAN1Q6PJG2 1045 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 TMEM184AQ6ZMB5 413 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 SPATA31D4Q6ZUB0 917 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 PIGZQ86VD9 579 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 SCN4BQ8IWT1 228 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 NOX5Q96PH1 765 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 GAS2L1Q99501 681 aaPredicted RBP13.01□□□□□ -0.33
LINC00339-204ENST00000434233 SEPT5Q99719 369 aaPredicted RBP13.01□□□□□ -0.33
LINC00339-204ENST00000434233 SLC4A5Q9BY07 1137 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 RHOBTB2Q9BYZ6 727 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 TMEM30AQ9NV96 361 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 SEPT11Q9NVA2 429 aaKnown RBP13.01□□□□□ -0.33
LINC00339-204ENST00000434233 COMMD8Q9NX08 183 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 HCFC2Q9Y5Z7 792 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 EPN1Q9Y6I3 576 aaPredicted RBP13.01□□□□□ -0.33
LINC00339-204ENST00000434233 MYO7AQ13402 2215 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 TRIOBPQ9H2D6 2365 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 A0A087X0T9 212 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 HHLA1C9JL84 531 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 F8VP50 259 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 PRRG1O14668 218 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 NCK2O43639 380 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 ZMYND10O75800 440 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 LCA5LO95447 670 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 FAM228BP0C875 321 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 EPCAMP16422 314 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 KIF11P52732 1056 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 CENPCQ03188 943 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 HYAL1Q12794 435 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 ADAM15Q13444 863 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 ADGRE1Q14246 886 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 DDR2Q16832 855 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 TCEAL5Q5H9L2 206 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 RAB41Q5JT25 222 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 CCDC122Q5T0U0 273 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 C10orf76Q5T2E6 689 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 ALKBH5Q6P6C2 394 aaKnown RBP13□□□□□ -0.33
LINC00339-204ENST00000434233 TMEM110Q86TL2 294 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 ERICH1Q86X53 443 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 PHF13Q86YI8 300 aaPredicted RBP13□□□□□ -0.33
LINC00339-204ENST00000434233 PASD1Q8IV76 773 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 NUP93Q8N1F7 819 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 TTC9BQ8N6N2 239 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 C1orf131Q8NDD1 294 aaKnown RBP13□□□□□ -0.33
LINC00339-204ENST00000434233 CPA5Q8WXQ8 436 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 VCPIP1Q96JH7 1222 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 PPP1R13BQ96KQ4 1090 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 MIS12Q9H081 205 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 ISCUQ9H1K1 167 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 CYTH4Q9UIA0 394 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 NAGPAQ9UK23 515 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 ASB3Q9Y575 518 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 INSL5Q9Y5Q6 135 aa13□□□□□ -0.33
LINC00339-204ENST00000434233 SOWAHDA6NJG2 315 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 EIF3CLB5ME19 914 aaKnown RBP12.99□□□□□ -0.33
LINC00339-204ENST00000434233 TULP2O00295 520 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 TNFRSF10BO14763 440 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 ARHGAP6O43182 974 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 RTN3O95197 1032 aaPredicted RBP12.99□□□□□ -0.33
LINC00339-204ENST00000434233 PAPLNO95428 1278 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 FTLP02792 175 aaPredicted RBP12.99□□□□□ -0.33
LINC00339-204ENST00000434233 C8AP07357 584 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 CSH1P0DML2 217 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 CSH2P0DML3 217 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 IGFBP4P22692 258 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 HOXA9P31269 272 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 NSFP46459 744 aaKnown RBP12.99□□□□□ -0.33
LINC00339-204ENST00000434233 GABRB2P47870 512 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 EPHB3P54753 998 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 GFPT1Q06210 699 aaPredicted RBP12.99□□□□□ -0.33
LINC00339-204ENST00000434233 PPM1LQ5SGD2 360 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 LIN9Q5TKA1 542 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 NAA35Q5VZE5 725 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 RAD9BQ6WBX8 426 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 DENND5BQ6ZUT9 1274 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 SCML4Q8N228 414 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 EFHBQ8N7U6 833 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 MSANTD4Q8NCY6 345 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 SLC7A14Q8TBB6 771 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 CASP10Q92851 521 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 C18orf8Q96DM3 657 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 FAM161BQ96MY7 647 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 EIF3CQ99613 913 aaKnown RBP12.99□□□□□ -0.33
LINC00339-204ENST00000434233 IGFLR1Q9H665 355 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 LRRC4Q9HBW1 653 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 MAN1C1Q9NR34 630 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 IL37Q9NZH6 218 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 EHD2Q9NZN4 543 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 NENFQ9UMX5 172 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 YIPF1Q9Y548 306 aa12.99□□□□□ -0.33
LINC00339-204ENST00000434233 GREB1Q4ZG55 1949 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 SLC38A8A6NNN8 435 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms