RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 AMPD2Q01433 879 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 CUL1Q13616 776 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 MFSD10Q14728 455 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 TMC5Q6UXY8 1006 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 ZNF333Q96JL9 665 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 TRNAU1APQ9NX07 287 aaKnown RBP10.23□□□□□ -0.77
USP54-205ENST00000424265 NDE1Q9NXR1 346 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 RIPK3Q9Y572 518 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 COMMD10Q9Y6G5 202 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 ZNF536O15090 1300 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 LGALS16A8MUM7 142 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 GPR182O15218 404 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 MAPK13O15264 365 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 DUSP11O75319 330 aaKnown RBP10.23□□□□□ -0.77
USP54-205ENST00000424265 LGALS2P05162 132 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 RNASE9P60153 205 aaKnown RBP10.23□□□□□ -0.77
USP54-205ENST00000424265 CDR2Q01850 454 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 SLC34A1Q06495 639 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 LPIN1Q14693 890 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 LY6KQ17RY6 165 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 NOTUMQ6P988 496 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 ELMSAN1Q6PJG2 1045 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 USP49Q70CQ1 688 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 SMYD4Q8IYR2 804 aaPredicted RBP10.23□□□□□ -0.77
USP54-205ENST00000424265 CFAP61Q8NHU2 1237 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 FNDC8Q8TC99 324 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 TRIM10Q9UDY6 481 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 COQ6Q9Y2Z9 468 aa10.23□□□□□ -0.77
USP54-205ENST00000424265 A0A0U1RQJ8 604 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 TNFRSF10AO00220 468 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 CLIC2O15247 247 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 PARNO95453 639 aaKnown RBP10.22□□□□□ -0.77
USP54-205ENST00000424265 TPBGLP0DKB5 382 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 TBXAS1P24557 533 aaPredicted RBP10.22□□□□□ -0.77
USP54-205ENST00000424265 FLT3LGP49771 235 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 GPC3P51654 580 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 CLUL1Q15846 466 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 CTC1Q2NKJ3 1217 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 NT5DC1Q5TFE4 455 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 CCDC62Q6P9F0 684 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 GRAMD2AQ8IUY3 354 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 NKX1-2Q9UD57 310 aaPredicted RBP10.22□□□□□ -0.77
USP54-205ENST00000424265 MROH7Q68CQ1 1323 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 A0A1W2PQC6 194 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 PABPN1LA6NDY0 278 aaKnown RBP10.22□□□□□ -0.77
USP54-205ENST00000424265 M0R2N6 131 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 HAUS5O94927 633 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 ABL1P00519 1130 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 IRX4P78413 519 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 ZBTB16Q05516 673 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 CRHR2Q13324 411 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 COL9A3Q14050 684 aaPredicted RBP10.22□□□□□ -0.77
USP54-205ENST00000424265 GIT2Q14161 759 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 PASD1Q8IV76 773 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 ZNF560Q96MR9 790 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 SPOCK3Q9BQ16 436 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 HEPHQ9BQS7 1158 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 TRIM33Q9UPN9 1127 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 KRT6CP48668 564 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 PTK2Q05397 1052 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 KIAA1755Q5JYT7 1200 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 PLA2G4FQ68DD2 849 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 C4orf32Q8N8J7 132 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 DIS3LQ8TF46 1054 aaKnown RBP10.22□□□□□ -0.77
USP54-205ENST00000424265 PNMA5Q96PV4 448 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 STARD7Q9NQZ5 370 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 SLC38A7Q9NVC3 462 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 STK39Q9UEW8 545 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 PFDN6O15212 129 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 HOXA2O43364 376 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 MED7O43513 233 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 ADCYAP1R1P41586 468 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 RAB15P59190 212 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 DGKZQ13574 1117 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 ATP1A4Q13733 1029 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 SPOUT1Q5T280 376 aaKnown RBP10.22□□□□□ -0.77
USP54-205ENST00000424265 CYTH2Q99418 400 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 HSD17B14Q9BPX1 270 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 PORCNQ9H237 461 aa10.22□□□□□ -0.77
USP54-205ENST00000424265 SAMSN1Q9NSI8 373 aaKnown RBP10.22□□□□□ -0.77
USP54-205ENST00000424265 UTP11Q9Y3A2 253 aaKnown RBP10.22□□□□□ -0.77
USP54-205ENST00000424265 TNFRSF8P28908 595 aa10.21□□□□□ -0.77
USP54-205ENST00000424265 POLR2BP30876 1174 aaKnown RBP10.21□□□□□ -0.77
USP54-205ENST00000424265 PPARGP37231 505 aaPredicted RBP10.21□□□□□ -0.77
USP54-205ENST00000424265 VAMP7P51809 220 aa10.21□□□□□ -0.77
USP54-205ENST00000424265 PLCB3Q01970 1234 aa10.21□□□□□ -0.77
USP54-205ENST00000424265 GRIN1Q05586 938 aa10.21□□□□□ -0.77
USP54-205ENST00000424265 NFX1Q12986 1120 aaKnown RBP10.21□□□□□ -0.77
USP54-205ENST00000424265 STK4Q13043 487 aa10.21□□□□□ -0.77
USP54-205ENST00000424265 GRIK4Q16099 956 aa10.21□□□□□ -0.77
USP54-205ENST00000424265 ADRM1Q16186 407 aa10.21□□□□□ -0.77
USP54-205ENST00000424265 LLGL2Q6P1M3 1020 aa10.21□□□□□ -0.77
USP54-205ENST00000424265 RASSF3Q86WH2 238 aa10.21□□□□□ -0.77
USP54-205ENST00000424265 CYP2W1Q8TAV3 490 aa10.21□□□□□ -0.77
USP54-205ENST00000424265 STARD8Q92502 1023 aa10.21□□□□□ -0.77
USP54-205ENST00000424265 TMEM143Q96AN5 459 aa10.21□□□□□ -0.77
USP54-205ENST00000424265 RNF25Q96BH1 459 aaPredicted RBP10.21□□□□□ -0.77
USP54-205ENST00000424265 ITPKCQ96DU7 683 aa10.21□□□□□ -0.77
USP54-205ENST00000424265 OMA1Q96E52 524 aa10.21□□□□□ -0.77
USP54-205ENST00000424265 SNX25Q9H3E2 840 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms