RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 OTUD5Q96G74 571 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 CNGB3Q9NQW8 809 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 GPRC5DQ9NZD1 345 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 RNF112Q9ULX5 631 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 INO80Q9ULG1 1556 aaPredicted RBP12.48□□□□□ -0.41
UBR4-205ENST00000417040 ZNF197O14709 1029 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 GLRA3O75311 464 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 RBP5P82980 135 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 TRAF2Q12933 501 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 ZCCHC23Q6ZST2 131 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 BHMTQ93088 406 aa12.48□□□□□ -0.41
UBR4-205ENST00000417040 EIF3DO15371 548 aaKnown RBP eCLIP12.47□□□□□ -0.415e-8■■□□□ 11.4
UBR4-205ENST00000417040 PSMD3O43242 534 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 SPAG6O75602 509 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 NCAM1P13591 858 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 POU1F1P28069 291 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 FXR2P51116 673 aaKnown RBP eCLIP12.47□□□□□ -0.418e-9■■■■□ 21.9
UBR4-205ENST00000417040 SLC34A1Q06495 639 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 TWF1Q12792 350 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 PPCSQ9HAB8 311 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 NCAPD2Q15021 1401 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 NCOA3Q9Y6Q9 1424 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 FAM58BPP0C7Q3 252 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 ATP4AP20648 1035 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 SLC1A6P48664 564 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 WASHC5Q12768 1159 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 UGP2Q16851 508 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 CENPPQ6IPU0 288 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 MED15Q96RN5 788 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 WDR35Q9P2L0 1181 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 FBXO40Q9UH90 709 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 CRB1P82279 1406 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 PSTPIP1O43586 416 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 CTSHP09668 335 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 BAG6P46379 1132 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 PDK1Q15118 436 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 ZBTB49Q6ZSB9 765 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 LRRC6Q86X45 466 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 CLVS1Q8IUQ0 354 aaPredicted RBP12.47□□□□□ -0.41
UBR4-205ENST00000417040 ELMOD1Q8N336 334 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 PYDC1Q8WXC3 89 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 ZBED2Q9BTP6 218 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 C6orf62Q9GZU0 229 aaPredicted RBP12.47□□□□□ -0.41
UBR4-205ENST00000417040 EFCAB1Q9HAE3 211 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 ZNF682O95780 498 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 NDUFB10O96000 172 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 GHRP10912 638 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 RASA1P20936 1047 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 GCLCP48506 637 aaPredicted RBP12.47□□□□□ -0.41
UBR4-205ENST00000417040 R3HDM1Q15032 1099 aaKnown RBP12.47□□□□□ -0.41
UBR4-205ENST00000417040 OMA1Q96E52 524 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 ZNF560Q96MR9 790 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 GRIP2Q9C0E4 1043 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 UBP1Q9NZI7 540 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 SPTLC1O15269 473 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 EFCAB14O75071 495 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 SOX6P35712 828 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 RABL6Q3YEC7 729 aaPredicted RBP12.47□□□□□ -0.41
UBR4-205ENST00000417040 STRA8Q7Z7C7 330 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 SETD3Q86TU7 594 aaPredicted RBP12.47□□□□□ -0.41
UBR4-205ENST00000417040 STMN3Q9NZ72 180 aa12.47□□□□□ -0.41
UBR4-205ENST00000417040 PLEKHG2Q9H7P9 1386 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 DNALI1O14645 258 aaPredicted RBP12.46□□□□□ -0.41
UBR4-205ENST00000417040 CPSF4O95639 269 aaKnown RBP12.46□□□□□ -0.41
UBR4-205ENST00000417040 FAM86B2P0C5J1 330 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 PSMB9P28065 219 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 EFNA5P52803 228 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 CUL2Q13617 745 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 CLEC16AQ2KHT3 1053 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 SEL1L3Q68CR1 1132 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 CBWD2Q8IUF1 395 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 EFCAB3Q8N7B9 438 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 IMPAD1Q9NX62 359 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 NPTXRO95502 500 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 SHBGP04278 402 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 TXNP10599 105 aaKnown RBP12.46□□□□□ -0.41
UBR4-205ENST00000417040 CYP11B1P15538 503 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 RAB14P61106 215 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 TBCELQ5QJ74 424 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 ATF7IP2Q5U623 682 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 CYP2R1Q6VVX0 501 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 RIPOR1Q6ZS17 1223 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 KCTD14Q9BQ13 255 aaPredicted RBP12.46□□□□□ -0.41
UBR4-205ENST00000417040 CSDE1O75534 798 aaKnown RBP12.46□□□□□ -0.41
UBR4-205ENST00000417040 IL5RAQ01344 420 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 OTUD3Q5T2D3 398 aaPredicted RBP12.46□□□□□ -0.41
UBR4-205ENST00000417040 TTI2Q6NXR4 508 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 DENND1BQ6P3S1 775 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 BLOC1S5Q8TDH9 187 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 TCP10LQ8TDR4 215 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 NT5C1AQ9BXI3 368 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 PRR12Q9ULL5 1215 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 DAGLAQ9Y4D2 1042 aa12.46□□□□□ -0.41
UBR4-205ENST00000417040 COPG1Q9Y678 874 aaKnown RBP12.46□□□□□ -0.41
UBR4-205ENST00000417040 GSNP06396 782 aa12.46□□□□□ -0.42
UBR4-205ENST00000417040 RALBP11234 206 aa12.46□□□□□ -0.42
UBR4-205ENST00000417040 MMRN1Q13201 1228 aa12.46□□□□□ -0.42
UBR4-205ENST00000417040 PKN2Q16513 984 aaKnown RBP12.46□□□□□ -0.42
UBR4-205ENST00000417040 DALRD3Q5D0E6 543 aaKnown RBP12.46□□□□□ -0.42
UBR4-205ENST00000417040 TFDP3Q5H9I0 405 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms