RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 K7EQS6 105 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 CAVIN2O95810 425 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 KRT19P08727 400 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 DDX6P26196 483 aaKnown RBP eCLIP13.82□□□□□ -0.2
LINC00339-202ENST00000416769 TXLNAP40222 546 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 IFNAR2P48551 515 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 UBE2HP62256 183 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 FOXC1Q12948 553 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 SOWAHAQ2M3V2 549 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 SLFN12LQ6IEE8 588 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 ANO7Q6IWH7 933 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 C12orf40Q86WS4 652 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 ADGRF2Q8IZF7 708 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 CAMKK1Q8N5S9 505 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 CSGALNACT2Q8N6G5 542 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 MDGA1Q8NFP4 955 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 OR5B17Q8NGF7 314 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 USP33Q8TEY7 942 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 KBTBD7Q8WVZ9 684 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 RLN3Q8WXF3 142 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 DDX1Q92499 740 aaKnown RBP13.82□□□□□ -0.2
LINC00339-202ENST00000416769 HPS3Q969F9 1004 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 MYLPFQ96A32 169 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 MYRFLQ96LU7 910 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 ZNF560Q96MR9 790 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 CRTAC1Q9NQ79 661 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 FSCN3Q9NQT6 498 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 TMEM30AQ9NV96 361 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 RBAKQ9NYW8 714 aaPredicted RBP13.82□□□□□ -0.2
LINC00339-202ENST00000416769 CCDC39Q9UFE4 941 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 PCDHGA5Q9Y5G8 931 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 SPEGQ15772 3267 aa13.82□□□□□ -0.2
LINC00339-202ENST00000416769 ASPMQ8IZT6 3477 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 TRAV19A0A0A6YYK7 116 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 FOXD2O60548 495 aaPredicted RBP13.81□□□□□ -0.2
LINC00339-202ENST00000416769 GADD45BO75293 160 aaPredicted RBP13.81□□□□□ -0.2
LINC00339-202ENST00000416769 AKAP3O75969 853 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 IL18RAPO95256 599 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 PAX3P23760 479 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 SLC6A11P48066 632 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 CACNA2D1P54289 1103 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 ZNF252P-AS1Q0IIN9 211 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 SMARCB1Q12824 385 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 NFE2Q16621 373 aaPredicted RBP13.81□□□□□ -0.2
LINC00339-202ENST00000416769 SH3PXD2AQ5TCZ1 1133 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 EMC10Q5UCC4 262 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 PMS2CLQ68D20 193 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 TMEM92Q6UXU6 159 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 ARMCX6Q7L4S7 300 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 TTC30AQ86WT1 665 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 TSTD1Q8NFU3 115 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 TRMT2BQ96GJ1 504 aaKnown RBP13.81□□□□□ -0.2
LINC00339-202ENST00000416769 ACBD6Q9BR61 282 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 TMEM121BQ9BXQ6 578 aaPredicted RBP13.81□□□□□ -0.2
LINC00339-202ENST00000416769 MRPL44Q9H9J2 332 aaKnown RBP13.81□□□□□ -0.2
LINC00339-202ENST00000416769 SMPD4Q9NXE4 827 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 WASF3Q9UPY6 502 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 HPSEQ9Y251 543 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 ATRXP46100 2492 aa13.81□□□□□ -0.2
LINC00339-202ENST00000416769 TNRC6BQ9UPQ9 1833 aaKnown RBP13.8□□□□□ -0.2
LINC00339-202ENST00000416769 ADAMTS9Q9P2N4 1935 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 PCNX2A6NKB5 2137 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 CDX4O14627 284 aaPredicted RBP13.8□□□□□ -0.2
LINC00339-202ENST00000416769 GABRDO14764 452 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 HUS1O60921 280 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 PRPF6O94906 941 aaKnown RBP13.8□□□□□ -0.2
LINC00339-202ENST00000416769 GCNT3O95395 438 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 CYP17A1P05093 508 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 USP17L7P0C7H9 530 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 BDNFP23560 247 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 RPL10AP62906 217 aaKnown RBP13.8□□□□□ -0.2
LINC00339-202ENST00000416769 IRX4P78413 519 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 ELF2Q15723 593 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 L1TD1Q5T7N2 865 aaKnown RBP13.8□□□□□ -0.2
LINC00339-202ENST00000416769 KIAA1211LQ6NV74 962 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 SPATA2LQ8IUW3 424 aaPredicted RBP13.8□□□□□ -0.2
LINC00339-202ENST00000416769 ERLEC1Q96DZ1 483 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 SYT15Q9BQS2 421 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 PANK2Q9BZ23 570 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 RNF38Q9H0F5 515 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 TMEM206Q9H813 350 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 ABCB6Q9NP58 842 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 EBF1Q9UH73 591 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 BAHCC1Q9P281 2608 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 ATXN2Q99700 1313 aaKnown RBP13.8□□□□□ -0.2
LINC00339-202ENST00000416769 PKD1L2Q7Z442 2459 aa13.8□□□□□ -0.2
LINC00339-202ENST00000416769 A0A1B0GVL5 298 aa13.79□□□□□ -0.2
LINC00339-202ENST00000416769 LEFTY2O00292 366 aa13.79□□□□□ -0.2
LINC00339-202ENST00000416769 PROS1P07225 676 aa13.79□□□□□ -0.2
LINC00339-202ENST00000416769 PDGFRBP09619 1106 aa13.79□□□□□ -0.2
LINC00339-202ENST00000416769 ATXN8OSP0DMR3 200 aa13.79□□□□□ -0.2
LINC00339-202ENST00000416769 HDCP19113 662 aa13.79□□□□□ -0.2
LINC00339-202ENST00000416769 PTMSP20962 102 aa13.79□□□□□ -0.2
LINC00339-202ENST00000416769 PNPLA4P41247 253 aa13.79□□□□□ -0.2
LINC00339-202ENST00000416769 MYL7Q01449 175 aa13.79□□□□□ -0.2
LINC00339-202ENST00000416769 KCNB1Q14721 858 aa13.79□□□□□ -0.2
LINC00339-202ENST00000416769 FBXO43Q4G163 708 aa13.79□□□□□ -0.2
LINC00339-202ENST00000416769 FAM171BQ6P995 826 aa13.79□□□□□ -0.2
LINC00339-202ENST00000416769 CCDC73Q6ZRK6 1079 aa13.79□□□□□ -0.2
LINC00339-202ENST00000416769 FILIP1Q7Z7B0 1213 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms