RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 MEA1Q16626 185 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 ITPRIPL1Q6GPH6 555 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 B3GNT9Q6UX72 402 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 CCDC149Q6ZUS6 474 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 CNPY4Q8N129 248 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 SNX27Q96L92 541 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 HSFY1Q96LI6 401 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 THAP2Q9H0W7 228 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 GANQ9H2C0 597 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 PPANQ9NQ55 473 aaKnown RBP8.91□□□□□ -0.98
SYNE1-211ENST00000413186 SPG21Q9NZD8 308 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 DDX60LQ5H9U9 1706 aaKnown RBP8.91□□□□□ -0.98
SYNE1-211ENST00000413186 ABHD14A-ACY1A0A1B0GW23 586 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 TLL1O43897 1013 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 GRAP2O75791 330 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 ACAT1P24752 427 aaKnown RBP8.91□□□□□ -0.98
SYNE1-211ENST00000413186 C1QTNF8P60827 252 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 HEATR6Q6AI08 1181 aaKnown RBP8.91□□□□□ -0.98
SYNE1-211ENST00000413186 PCGF5Q86SE9 256 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 RNPC3Q96LT9 517 aaKnown RBP8.91□□□□□ -0.98
SYNE1-211ENST00000413186 CATSPERBQ9H7T0 1116 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 VIPAS39Q9H9C1 493 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 EPB41L5Q9HCM4 733 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 AVENQ9NQS1 362 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-211ENST00000413186 TLR8Q9NR97 1041 aaKnown RBP8.91□□□□□ -0.98
SYNE1-211ENST00000413186 OLA1Q9NTK5 396 aaKnown RBP8.91□□□□□ -0.98
SYNE1-211ENST00000413186 DDIT4Q9NX09 232 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 KLHL8Q9P2G9 620 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-211ENST00000413186 GJD2Q9UKL4 321 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.91□□□□□ -0.98
SYNE1-211ENST00000413186 GOLGA8CPA6NN73 597 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 PMM2O15305 246 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 PRLRP16471 622 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 CA4P22748 312 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 DNAJB2P25686 324 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 SLC11A2P49281 568 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 TKTL1P51854 596 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 SLC12A2P55011 1212 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 RAD51Q06609 339 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 CEP85LQ5SZL2 805 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 DNAAF3Q8N9W5 541 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 SLC2A14Q8TDB8 520 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 ZBTB10Q96DT7 871 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 PAWRQ96IZ0 340 aaKnown RBP8.91□□□□□ -0.98
SYNE1-211ENST00000413186 RSRC1Q96IZ7 334 aaKnown RBP8.91□□□□□ -0.98
SYNE1-211ENST00000413186 EIF2AQ9BY44 585 aaKnown RBP8.91□□□□□ -0.98
SYNE1-211ENST00000413186 SMYD3Q9H7B4 428 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 KCNK9Q9NPC2 374 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 FARP1Q9Y4F1 1045 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-211ENST00000413186 CFAP69A5D8W1 941 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 SMIM23A6NLE4 172 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 XYLBO75191 536 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 ATP4AP20648 1035 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 COMTP21964 271 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 CTNNB1P35222 781 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 CAV1Q03135 178 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 KCNMA1Q12791 1236 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 PPP2R5DQ14738 602 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 PHLDB3Q6NSJ2 640 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 CNKSR3Q6P9H4 555 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 PDIK1LQ8N165 341 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 CCDC63Q8NA47 563 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 SLC20A1Q8WUM9 679 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 AP1M1Q9BXS5 423 aa8.91□□□□□ -0.98
SYNE1-211ENST00000413186 H0YC42 278 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 C4BPAP04003 597 aaKnown RBP8.9□□□□□ -0.98
SYNE1-211ENST00000413186 MAP7Q14244 749 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 TRIM60Q495X7 471 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 ARMCX6Q7L4S7 300 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 FAM228AQ86W67 206 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 REXO1L1PQ8IX06 675 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 C7orf61Q8IZ16 206 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 MCOLN2Q8IZK6 566 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 ANKLE1Q8NAG6 615 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 CAPS2Q9BXY5 557 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 SP110Q9HB58 689 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.9□□□□□ -0.98
SYNE1-211ENST00000413186 IGKV6-21A0A0C4DH24 114 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 FAM187AA6NFU0 413 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 M0QYT0 321 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 PSTPIP1O43586 416 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 PPP1R37O75864 691 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 MICAL2O94851 1124 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 RRM1P23921 792 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 CST5P28325 142 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-211ENST00000413186 EPHB1P54762 984 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 PABPC1LQ4VXU2 614 aaKnown RBP8.9□□□□□ -0.98
SYNE1-211ENST00000413186 CTAGE3PQ8IX95 158 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 TPCN2Q8NHX9 752 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 GSDMBQ8TAX9 411 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 EPS8L1Q8TE68 723 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 TTC1Q99614 292 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 CARD9Q9H257 536 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 CNOT10Q9H9A5 744 aaKnown RBP8.9□□□□□ -0.98
SYNE1-211ENST00000413186 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.9□□□□□ -0.98
SYNE1-211ENST00000413186 MAD1L1Q9Y6D9 718 aa8.9□□□□□ -0.98
SYNE1-211ENST00000413186 A0A0U1RQF3 1178 aa8.9□□□□□ -0.99
SYNE1-211ENST00000413186 ADH1AP07327 375 aa8.9□□□□□ -0.99
SYNE1-211ENST00000413186 YWHAQP27348 245 aa8.9□□□□□ -0.99
SYNE1-211ENST00000413186 HPDP32754 393 aaPredicted RBP8.9□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms