RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 CDH22Q9UJ99 828 aa31.05■■■□□ 2.56
USP42-202ENST00000404008 ZNF638Q14966 1978 aaKnown RBP31.04■■■□□ 2.56
USP42-202ENST00000404008 BST2Q10589 180 aaKnown RBP31.04■■■□□ 2.56
USP42-202ENST00000404008 TRIM14Q14142 442 aa31.04■■■□□ 2.56
USP42-202ENST00000404008 MEA1Q16626 185 aa31.04■■■□□ 2.56
USP42-202ENST00000404008 LEXMQ3ZCV2 418 aa31.04■■■□□ 2.56
USP42-202ENST00000404008 DNAJB7Q7Z6W7 309 aaPredicted RBP31.04■■■□□ 2.56
USP42-202ENST00000404008 NOP9Q86U38 636 aaKnown RBP31.04■■■□□ 2.56
USP42-202ENST00000404008 FMNL3Q8IVF7 1028 aa31.04■■■□□ 2.56
USP42-202ENST00000404008 UBA3Q8TBC4 463 aa31.04■■■□□ 2.56
USP42-202ENST00000404008 CPLX3Q8WVH0 158 aa31.04■■■□□ 2.56
USP42-202ENST00000404008 SLC38A8A6NNN8 435 aa31.03■■■□□ 2.56
USP42-202ENST00000404008 M0QYV0 167 aa31.03■■■□□ 2.56
USP42-202ENST00000404008 CFHP08603 1231 aa31.03■■■□□ 2.56
USP42-202ENST00000404008 FERP16591 822 aa31.03■■■□□ 2.56
USP42-202ENST00000404008 SLC8A3P57103 927 aa31.03■■■□□ 2.56
USP42-202ENST00000404008 ZBED6P86452 979 aa31.03■■■□□ 2.56
USP42-202ENST00000404008 ARID5AQ03989 594 aa31.03■■■□□ 2.56
USP42-202ENST00000404008 GRASPQ7Z6J2 395 aaPredicted RBP31.03■■■□□ 2.56
USP42-202ENST00000404008 ZNF397Q8NF99 534 aaPredicted RBP31.03■■■□□ 2.56
USP42-202ENST00000404008 DDX1Q92499 740 aaKnown RBP31.03■■■□□ 2.56
USP42-202ENST00000404008 PNPLA8Q9NP80 782 aa31.03■■■□□ 2.56
USP42-202ENST00000404008 DNMT3BQ9UBC3 853 aaKnown RBP31.03■■■□□ 2.56
USP42-202ENST00000404008 NOCTQ9UK39 431 aaKnown RBP31.03■■■□□ 2.56
USP42-202ENST00000404008 PCDHGC3Q9UN70 934 aa31.03■■■□□ 2.56
USP42-202ENST00000404008 HHLA1C9JL84 531 aa31.02■■■□□ 2.56
USP42-202ENST00000404008 TNFRSF10BO14763 440 aa31.02■■■□□ 2.56
USP42-202ENST00000404008 SETSIPP0DME0 302 aa31.02■■■□□ 2.56
USP42-202ENST00000404008 CSH1P0DML2 217 aa31.02■■■□□ 2.56
USP42-202ENST00000404008 CSH2P0DML3 217 aa31.02■■■□□ 2.56
USP42-202ENST00000404008 HMGA1P17096 107 aaKnown RBP31.02■■■□□ 2.56
USP42-202ENST00000404008 PTPN2P17706 415 aa31.02■■■□□ 2.56
USP42-202ENST00000404008 CASP14P31944 242 aa31.02■■■□□ 2.56
USP42-202ENST00000404008 PDE4CQ08493 712 aa31.02■■■□□ 2.56
USP42-202ENST00000404008 SMAD4Q13485 552 aaKnown RBP31.02■■■□□ 2.56
USP42-202ENST00000404008 MTMR3Q13615 1198 aa31.02■■■□□ 2.56
USP42-202ENST00000404008 TMC6Q7Z403 805 aa31.02■■■□□ 2.56
USP42-202ENST00000404008 IRF2BP2Q7Z5L9 587 aa31.02■■■□□ 2.56
USP42-202ENST00000404008 SUSD6Q92537 303 aa31.02■■■□□ 2.56
USP42-202ENST00000404008 CORO1BQ9BR76 489 aa31.02■■■□□ 2.56
USP42-202ENST00000404008 AIPL1Q9NZN9 384 aa31.02■■■□□ 2.56
USP42-202ENST00000404008 LUC7L2Q9Y383 392 aaKnown RBP31.02■■■□□ 2.56
USP42-202ENST00000404008 USP15Q9Y4E8 981 aaPredicted RBP31.02■■■□□ 2.56
USP42-202ENST00000404008 OBSL1O75147 1896 aa31.01■■■□□ 2.55
USP42-202ENST00000404008 GRXCR2A6NFK2 248 aa31.01■■■□□ 2.55
USP42-202ENST00000404008 XPO1O14980 1071 aaKnown RBP31.01■■■□□ 2.55
USP42-202ENST00000404008 TFF2Q03403 129 aa31.01■■■□□ 2.55
USP42-202ENST00000404008 ATAT1Q5SQI0 421 aa31.01■■■□□ 2.55
USP42-202ENST00000404008 SFMBT2Q5VUG0 894 aa31.01■■■□□ 2.55
USP42-202ENST00000404008 E4F1Q66K89 784 aaPredicted RBP31.01■■■□□ 2.55
USP42-202ENST00000404008 DENND1BQ6P3S1 775 aa31.01■■■□□ 2.55
USP42-202ENST00000404008 DENND5BQ6ZUT9 1274 aa31.01■■■□□ 2.55
USP42-202ENST00000404008 SECISBP2LQ93073 1101 aaKnown RBP31.01■■■□□ 2.55
USP42-202ENST00000404008 RIPOR3Q96MK2 946 aa31.01■■■□□ 2.55
USP42-202ENST00000404008 LRRC3Q9BY71 257 aa31.01■■■□□ 2.55
USP42-202ENST00000404008 UBXN6Q9BZV1 441 aa31.01■■■□□ 2.55
USP42-202ENST00000404008 NUCKS1Q9H1E3 243 aaKnown RBP31.01■■■□□ 2.55
USP42-202ENST00000404008 MYO16Q9Y6X6 1858 aa31■■■□□ 2.55
USP42-202ENST00000404008 GOLGA6L3A6NEY3 463 aa31■■■□□ 2.55
USP42-202ENST00000404008 MBTPS2O43462 519 aa31■■■□□ 2.55
USP42-202ENST00000404008 CCDC172P0C7W6 258 aa31■■■□□ 2.55
USP42-202ENST00000404008 KRT9P35527 623 aa31■■■□□ 2.55
USP42-202ENST00000404008 MTHFRP42898 656 aa31■■■□□ 2.55
USP42-202ENST00000404008 EPHA5P54756 1037 aa31■■■□□ 2.55
USP42-202ENST00000404008 TBX2Q13207 712 aaPredicted RBP31■■■□□ 2.55
USP42-202ENST00000404008 TAF12Q16514 161 aa31■■■□□ 2.55
USP42-202ENST00000404008 ZNF677Q86XU0 584 aa31■■■□□ 2.55
USP42-202ENST00000404008 TMC8Q8IU68 726 aa31■■■□□ 2.55
USP42-202ENST00000404008 HS6ST3Q8IZP7 471 aa31■■■□□ 2.55
USP42-202ENST00000404008 NUP93Q8N1F7 819 aa31■■■□□ 2.55
USP42-202ENST00000404008 GADD45GIP1Q8TAE8 222 aaPredicted RBP31■■■□□ 2.55
USP42-202ENST00000404008 SLC20A1Q8WUM9 679 aa31■■■□□ 2.55
USP42-202ENST00000404008 TRMT2BQ96GJ1 504 aaKnown RBP31■■■□□ 2.55
USP42-202ENST00000404008 ASAH2Q9NR71 780 aa31■■■□□ 2.55
USP42-202ENST00000404008 THEGQ9P2T0 379 aa31■■■□□ 2.55
USP42-202ENST00000404008 DENND4CQ5VZ89 1909 aa30.99■■■□□ 2.55
USP42-202ENST00000404008 TULP2O00295 520 aa30.99■■■□□ 2.55
USP42-202ENST00000404008 RHOP08100 348 aa30.99■■■□□ 2.55
USP42-202ENST00000404008 PLA2G4AP47712 749 aa30.99■■■□□ 2.55
USP42-202ENST00000404008 SLC5A3P53794 718 aa30.99■■■□□ 2.55
USP42-202ENST00000404008 USP46P62068 366 aa30.99■■■□□ 2.55
USP42-202ENST00000404008 NTHL1P78549 312 aa30.99■■■□□ 2.55
USP42-202ENST00000404008 ASIC2Q16515 512 aa30.99■■■□□ 2.55
USP42-202ENST00000404008 PABPC1LQ4VXU2 614 aaKnown RBP30.99■■■□□ 2.55
USP42-202ENST00000404008 TAF3Q5VWG9 929 aa30.99■■■□□ 2.55
USP42-202ENST00000404008 GPRIN1Q7Z2K8 1008 aa30.99■■■□□ 2.55
USP42-202ENST00000404008 PIGZQ86VD9 579 aa30.99■■■□□ 2.55
USP42-202ENST00000404008 SLC35F5Q8WV83 523 aa30.99■■■□□ 2.55
USP42-202ENST00000404008 SYN2Q92777 582 aaPredicted RBP30.99■■■□□ 2.55
USP42-202ENST00000404008 MYRFLQ96LU7 910 aa30.99■■■□□ 2.55
USP42-202ENST00000404008 ZNF334Q9HCZ1 680 aaPredicted RBP30.99■■■□□ 2.55
USP42-202ENST00000404008 AVENQ9NQS1 362 aaPredicted RBP30.99■■■□□ 2.55
USP42-202ENST00000404008 UNC80Q8N2C7 3258 aa30.98■■■□□ 2.55
USP42-202ENST00000404008 ADCY5O95622 1261 aa30.98■■■□□ 2.55
USP42-202ENST00000404008 GPD2P43304 727 aa30.98■■■□□ 2.55
USP42-202ENST00000404008 CDR2Q01850 454 aa30.98■■■□□ 2.55
USP42-202ENST00000404008 NECTIN4Q96NY8 510 aa30.98■■■□□ 2.55
USP42-202ENST00000404008 TTLL2Q9BWV7 592 aa30.98■■■□□ 2.55
USP42-202ENST00000404008 LHX5Q9H2C1 402 aa30.98■■■□□ 2.55
USP42-202ENST00000404008 GRPEL1Q9HAV7 217 aa30.98■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms