RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 FBXL21Q9UKT6 434 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 DAAM1Q9Y4D1 1078 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 NUB1Q9Y5A7 615 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 TIMM13Q9Y5L4 95 aaPredicted RBP9.82□□□□□ -0.84
VPS53-203ENST00000401468 EML5Q05BV3 1969 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 GABRDO14764 452 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 TEX33O43247 280 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 AP5Z1O43299 807 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 PHACTR2O75167 634 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 NOL4O94818 638 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 TPM2P07951 284 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 KRT19P08727 400 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 SLC9A1P19634 815 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 RFX1P22670 979 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 INCA1Q0VD86 236 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 TRPC3Q13507 836 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 EXOC3L4Q17RC7 722 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 SOWAHAQ2M3V2 549 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 ZNF699Q32M78 642 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 PPM1LQ5SGD2 360 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 CWF19L1Q69YN2 538 aaKnown RBP9.81□□□□□ -0.84
VPS53-203ENST00000401468 PHLDB3Q6NSJ2 640 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 ENOSF1Q7L5Y1 443 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 OTOP3Q7RTS5 596 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 ZDHHC14Q8IZN3 488 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 TMEM86AQ8N2M4 240 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 KBTBD7Q8WVZ9 684 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 PIK3R5Q8WYR1 880 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 ACSF2Q96CM8 615 aaPredicted RBP9.81□□□□□ -0.84
VPS53-203ENST00000401468 FAM81BQ96LP2 452 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 NAA15Q9BXJ9 866 aaKnown RBP9.81□□□□□ -0.84
VPS53-203ENST00000401468 OXCT2Q9BYC2 517 aaPredicted RBP9.81□□□□□ -0.84
VPS53-203ENST00000401468 NIF3L1Q9GZT8 377 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 INTS2Q9H0H0 1204 aaKnown RBP9.81□□□□□ -0.84
VPS53-203ENST00000401468 GANQ9H2C0 597 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 CYP3A43Q9HB55 503 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 WDR6Q9NNW5 1121 aaKnown RBP9.81□□□□□ -0.84
VPS53-203ENST00000401468 APEX2Q9UBZ4 518 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 FBXW11Q9UKB1 542 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 DSEQ9UL01 958 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 CNTN6Q9UQ52 1028 aa9.81□□□□□ -0.84
VPS53-203ENST00000401468 DMDP11532 3685 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 ARHGEF37A1IGU5 675 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 KRBA1A5PL33 1030 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 SEC24AO95486 1093 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 C1RP00736 705 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 ODC1P11926 461 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 GJA1P17302 382 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 NPR3P17342 541 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 FSHRP23945 695 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 UBASH3AP57075 661 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 TDGQ13569 410 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 SLC5A9Q2M3M2 681 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 WDR72Q3MJ13 1102 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 FIGNQ5HY92 759 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 ZNF667Q5HYK9 610 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 FKBP15Q5T1M5 1219 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 LIN9Q5TKA1 542 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 KLHDC7AQ5VTJ3 777 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 SPOPLQ6IQ16 392 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 PARM1Q6UWI2 310 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 PDCL2Q8N4E4 241 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 GPR152Q8TDT2 470 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 ATOH1Q92858 354 aaPredicted RBP9.8□□□□□ -0.84
VPS53-203ENST00000401468 FGF14Q92915 247 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 TCEAL4Q96EI5 215 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 PGLYRP2Q96PD5 576 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 RTP3Q9BQQ7 232 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 PI4K2AQ9BTU6 479 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 IMPG2Q9BZV3 1241 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 TTYH3Q9C0H2 523 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 MMRN2Q9H8L6 949 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 FNIP2Q9P278 1114 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 L1RE1Q9UN81 338 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 SSX2IPQ9Y2D8 614 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 BACE2Q9Y5Z0 518 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 NUMBLQ9Y6R0 609 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 DMXL1Q9Y485 3027 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 CHD8Q9HCK8 2581 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 ITIH6Q6UXX5 1313 aa9.8□□□□□ -0.84
VPS53-203ENST00000401468 CFAP47Q6ZTR5 3102 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 WDR27A2RRH5 827 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 CYB561D2O14569 222 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 SOAT2O75908 522 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 F12P00748 615 aaPredicted RBP9.79□□□□□ -0.84
VPS53-203ENST00000401468 SERPINC1P01008 464 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 DCNP07585 359 aaKnown RBP9.79□□□□□ -0.84
VPS53-203ENST00000401468 P4HA1P13674 534 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 CEBPBP17676 345 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 ACO1P21399 889 aaKnown RBP9.79□□□□□ -0.84
VPS53-203ENST00000401468 CD72P21854 359 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 WARSP23381 471 aaKnown RBP9.79□□□□□ -0.84
VPS53-203ENST00000401468 TBXAS1P24557 533 aaPredicted RBP9.79□□□□□ -0.84
VPS53-203ENST00000401468 TNNC1P63316 161 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 ROR1Q01973 937 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 UBXN1Q04323 297 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 CUL2Q13617 745 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 SYCP1Q15431 976 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 QPCTQ16769 361 aa9.79□□□□□ -0.84
VPS53-203ENST00000401468 FILIP1LQ4L180 1135 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms