RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 EPC2Q52LR7 807 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 LAYNQ6UX15 382 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 FBXO33Q7Z6M2 555 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 SCUBE1Q8IWY4 988 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 TBC1D19Q8N5T2 526 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 FBXO25Q8TCJ0 367 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 MTERF3Q96E29 417 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 PI4K2AQ9BTU6 479 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 SLC24A2Q9UI40 661 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 MTRF1O75570 445 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 PSMA4P25789 261 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 KCNMA1Q12791 1236 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 MTMR2Q13614 643 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 MOXD1Q6UVY6 613 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 C1orf131Q8NDD1 294 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 RBM46Q8TBY0 533 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 TFB1MQ8WVM0 346 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 C17orf80Q9BSJ5 609 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 CLEC4MQ9H2X3 399 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 CDC42EP4Q9H3Q1 356 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 DAPK2Q9UIK4 370 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 APPL1Q9UKG1 709 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 PCDHB8Q9UN66 801 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 UNC13BO14795 1591 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 C19orf81C9J6K1 198 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 KPNA4O00629 521 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 ZC3H11AO75152 810 aaKnown RBP eCLIP10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 GUCY1B2O75343 617 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 ANXA9O76027 345 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 RGS20O76081 388 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 USP1O94782 785 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 PCSK1P29120 753 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 MCL1Q07820 350 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 C16orf72Q14CZ0 275 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 SV2CQ496J9 727 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 CCDC126Q96EE4 140 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 OTUD5Q96G74 571 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 FAM49BQ9NUQ9 324 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 EMC3Q9P0I2 261 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 ZBTB39O15060 712 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 FKBP6O75344 327 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 PDGFRBP09619 1106 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 RARBP10826 455 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 LRRC74AQ0VAA2 488 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 CENPPQ6IPU0 288 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 PKN3Q6P5Z2 889 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 VPS37AQ8NEZ2 397 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 JADE3Q92613 823 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 PHF21AQ96BD5 680 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 OTULINQ96BN8 352 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 ATAD3AQ9NVI7 634 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 BTBD7Q9P203 1132 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 TBX20Q9UMR3 447 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 SETD1BQ9UPS6 1966 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 SPHKAPQ2M3C7 1700 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 KANSL1LA0AUZ9 987 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 SNPHO15079 494 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 CCT3P49368 545 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 PSMC6P62333 389 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 GOLGA7BQ2TAP0 167 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 DCAF6Q58WW2 860 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 MEI1Q5TIA1 1274 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 CDC42EP5Q6NZY7 148 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 GPR141Q7Z602 305 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 SLC7A14Q8TBB6 771 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 PLEKHA8Q96JA3 519 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 OLFM1Q99784 485 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 VPS9D1Q9Y2B5 631 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 ZC3H4Q9UPT8 1303 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 E2F8A0AVK6 867 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 TIMM44O43615 452 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 OCM2P0CE71 109 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 OCMP0CE72 109 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 NUP62P37198 522 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 SYTL3Q4VX76 610 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 TCAIMQ8N3R3 496 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 FBXO36Q8NEA4 188 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 TARS2Q9BW92 718 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 DYRK4Q9NR20 520 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 SLC38A7Q9NVC3 462 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 CHORDC1Q9UHD1 332 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 RAB21Q9UL25 225 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 PTPRUQ92729 1446 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 A0A0G2JLW4 131 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 SOAT2O75908 522 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 KLHL18O94889 574 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 CYBBP04839 570 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 PTPN4P29074 926 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 TSC22D1Q15714 1073 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 PCSK7Q16549 785 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 AGAP9Q5VTM2 703 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 PTRHD1Q6GMV3 140 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 DENND1BQ6P3S1 775 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 BNC2Q6ZN30 1099 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 ZNF786Q8N393 782 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 OR6J1Q8NGC5 347 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 ATG4AQ8WYN0 398 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 ANKZF1Q9H8Y5 726 aa10.62□□□□□ -0.71
LIMCH1-203ENST00000396595 IL1RL2Q9HB29 575 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms