RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 SPATA17Q96L03 361 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 DUS2Q9NX74 493 aaKnown RBP17.69■□□□□ 0.42
PTPRK-208ENST00000392449 MYO16Q9Y6X6 1858 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 MED19A0JLT2 244 aaPredicted RBP17.69■□□□□ 0.42
PTPRK-208ENST00000392449 LRRIQ3A6PVS8 624 aaPredicted RBP17.69■□□□□ 0.42
PTPRK-208ENST00000392449 PHACTR2O75167 634 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 TACC1O75410 805 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 CLSTN1O94985 981 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 PAPSS2O95340 614 aaPredicted RBP17.69■□□□□ 0.42
PTPRK-208ENST00000392449 PTPN1P18031 435 aaKnown RBP17.69■□□□□ 0.42
PTPRK-208ENST00000392449 ANXA13P27216 316 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 GJA4P35212 333 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 SNRPFP62306 86 aaKnown RBP17.69■□□□□ 0.42
PTPRK-208ENST00000392449 DLG4P78352 724 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 SPEM2Q0P670 501 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 IFRD2Q12894 506 aaPredicted RBP17.69■□□□□ 0.42
PTPRK-208ENST00000392449 BIRC3Q13489 604 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 SIM2Q14190 667 aaPredicted RBP17.69■□□□□ 0.42
PTPRK-208ENST00000392449 KCNB1Q14721 858 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 MAPRE1Q15691 268 aaKnown RBP17.69■□□□□ 0.42
PTPRK-208ENST00000392449 ATL3Q6DD88 541 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 DENND5BQ6ZUT9 1274 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 OSCP1Q8WVF1 389 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 EZH1Q92800 747 aaPredicted RBP17.69■□□□□ 0.42
PTPRK-208ENST00000392449 LINC00597Q9H2U6 94 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 ECT2Q9H8V3 914 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 EXOC1Q9NV70 894 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 GMEB2Q9UKD1 530 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 USP18Q9UMW8 372 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 SOBPA7XYQ1 873 aa17.68■□□□□ 0.42
PTPRK-208ENST00000392449 A8MXQ7 604 aa17.68■□□□□ 0.42
PTPRK-208ENST00000392449 TRDMT1O14717 391 aaKnown RBP17.68■□□□□ 0.42
PTPRK-208ENST00000392449 RNF40O75150 1001 aa17.68■□□□□ 0.42
PTPRK-208ENST00000392449 PRR29P0C7W0 189 aa17.68■□□□□ 0.42
PTPRK-208ENST00000392449 HDCP19113 662 aa17.68■□□□□ 0.42
PTPRK-208ENST00000392449 GALK1P51570 392 aa17.68■□□□□ 0.42
PTPRK-208ENST00000392449 GRSF1Q12849 480 aaKnown RBP eCLIP17.68■□□□□ 0.42
PTPRK-208ENST00000392449 PDGFRLQ15198 375 aa17.68■□□□□ 0.42
PTPRK-208ENST00000392449 EML3Q32P44 896 aa17.68■□□□□ 0.42
PTPRK-208ENST00000392449 DGLUCYQ7Z3D6 616 aa17.68■□□□□ 0.42
PTPRK-208ENST00000392449 LONP2Q86WA8 852 aa17.68■□□□□ 0.42
PTPRK-208ENST00000392449 FSIP1Q8NA03 581 aa17.68■□□□□ 0.42
PTPRK-208ENST00000392449 B3GALNT2Q8NCR0 500 aa17.68■□□□□ 0.42
PTPRK-208ENST00000392449 SECISBP2LQ93073 1101 aaKnown RBP17.68■□□□□ 0.42
PTPRK-208ENST00000392449 B3GNT5Q9BYG0 378 aa17.68■□□□□ 0.42
PTPRK-208ENST00000392449 SDCBP2Q9H190 292 aa17.68■□□□□ 0.42
PTPRK-208ENST00000392449 KCTD10Q9H3F6 313 aa17.68■□□□□ 0.42
PTPRK-208ENST00000392449 RAB23Q9ULC3 237 aa17.68■□□□□ 0.42
PTPRK-208ENST00000392449 KIAA1549LQ6ZVL6 1849 aa17.67■□□□□ 0.42
PTPRK-208ENST00000392449 ANTXRLA6NF34 631 aa17.67■□□□□ 0.42
PTPRK-208ENST00000392449 VNN1O95497 513 aa17.67■□□□□ 0.42
PTPRK-208ENST00000392449 ABL1P00519 1130 aa17.67■□□□□ 0.42
PTPRK-208ENST00000392449 PDIA4P13667 645 aaKnown RBP17.67■□□□□ 0.42
PTPRK-208ENST00000392449 IFNAR2P48551 515 aa17.67■□□□□ 0.42
PTPRK-208ENST00000392449 ORC1Q13415 861 aa17.67■□□□□ 0.42
PTPRK-208ENST00000392449 ZNF699Q32M78 642 aa17.67■□□□□ 0.42
PTPRK-208ENST00000392449 SYNPOQ8N3V7 929 aa17.67■□□□□ 0.42
PTPRK-208ENST00000392449 PARD3BQ8TEW8 1205 aa17.67■□□□□ 0.42
PTPRK-208ENST00000392449 P2RY13Q9BPV8 354 aa17.67■□□□□ 0.42
PTPRK-208ENST00000392449 TTLL2Q9BWV7 592 aa17.67■□□□□ 0.42
PTPRK-208ENST00000392449 RNF38Q9H0F5 515 aa17.67■□□□□ 0.42
PTPRK-208ENST00000392449 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.67■□□□□ 0.42
PTPRK-208ENST00000392449 DMAC2Q9NW81 257 aa17.67■□□□□ 0.42
PTPRK-208ENST00000392449 SMPD4Q9NXE4 827 aa17.67■□□□□ 0.42
PTPRK-208ENST00000392449 DLL3Q9NYJ7 618 aa17.67■□□□□ 0.42
PTPRK-208ENST00000392449 CGNQ9P2M7 1197 aaKnown RBP17.67■□□□□ 0.42
PTPRK-208ENST00000392449 EML5Q05BV3 1969 aa17.67■□□□□ 0.42
PTPRK-208ENST00000392449 ZNF840PA6NDX5 716 aa17.66■□□□□ 0.42
PTPRK-208ENST00000392449 TRIM66O15016 1216 aa17.66■□□□□ 0.42
PTPRK-208ENST00000392449 FOXK2Q01167 660 aa17.66■□□□□ 0.42
PTPRK-208ENST00000392449 TAF10Q12962 218 aa17.66■□□□□ 0.42
PTPRK-208ENST00000392449 LAIR1Q6GTX8 287 aa17.66■□□□□ 0.42
PTPRK-208ENST00000392449 CPA6Q8N4T0 437 aa17.66■□□□□ 0.42
PTPRK-208ENST00000392449 ATP2A3Q93084 1043 aa17.66■□□□□ 0.42
PTPRK-208ENST00000392449 SYAP1Q96A49 352 aaPredicted RBP17.66■□□□□ 0.42
PTPRK-208ENST00000392449 SPATA32Q96LK8 384 aa17.66■□□□□ 0.42
PTPRK-208ENST00000392449 C8orf48Q96LL4 319 aa17.66■□□□□ 0.42
PTPRK-208ENST00000392449 KCNK16Q96T55 309 aa17.66■□□□□ 0.42
PTPRK-208ENST00000392449 TRPM5Q9NZQ8 1165 aa17.66■□□□□ 0.42
PTPRK-208ENST00000392449 ARHGAP26Q9UNA1 814 aa17.66■□□□□ 0.42
PTPRK-208ENST00000392449 HPSEQ9Y251 543 aa17.66■□□□□ 0.42
PTPRK-208ENST00000392449 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.66■□□□□ 0.42
PTPRK-208ENST00000392449 SDK1Q7Z5N4 2213 aa17.65■□□□□ 0.42
PTPRK-208ENST00000392449 LEFTY2O00292 366 aa17.65■□□□□ 0.42
PTPRK-208ENST00000392449 STAU1O95793 577 aaKnown RBP17.65■□□□□ 0.42
PTPRK-208ENST00000392449 C4BPAP04003 597 aaKnown RBP17.65■□□□□ 0.42
PTPRK-208ENST00000392449 NR3C1P04150 777 aa17.65■□□□□ 0.42
PTPRK-208ENST00000392449 CMA1P23946 247 aa17.65■□□□□ 0.42
PTPRK-208ENST00000392449 ATICP31939 592 aa17.65■□□□□ 0.42
PTPRK-208ENST00000392449 NDUFA8P51970 172 aa17.65■□□□□ 0.42
PTPRK-208ENST00000392449 NOP14P78316 857 aaKnown RBP17.65■□□□□ 0.42
PTPRK-208ENST00000392449 NCOA4Q13772 614 aa17.65■□□□□ 0.42
PTPRK-208ENST00000392449 PUM1Q14671 1186 aaKnown RBP eCLIP17.65■□□□□ 0.42
PTPRK-208ENST00000392449 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.65■□□□□ 0.42
PTPRK-208ENST00000392449 HHIPQ96QV1 700 aa17.65■□□□□ 0.42
PTPRK-208ENST00000392449 ELOVL4Q9GZR5 314 aa17.65■□□□□ 0.42
PTPRK-208ENST00000392449 HMGXB4Q9UGU5 601 aa17.65■□□□□ 0.42
PTPRK-208ENST00000392449 RALGAPA1Q6GYQ0 2036 aa17.64■□□□□ 0.42
PTPRK-208ENST00000392449 CLDN10P78369 228 aa17.64■□□□□ 0.41
PTPRK-208ENST00000392449 ZNF667Q5HYK9 610 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms