RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CTCFP49711 727 aaPredicted RBP13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 NUP107P57740 925 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 MRPS35P82673 323 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 HPS3Q969F9 1004 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 CHP1Q99653 195 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 RUVBL2Q9Y230 463 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 SPATA31A3Q5VYP0 1347 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 COILP38432 576 aaPredicted RBP13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 PWP1Q13610 501 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 PGS1Q32NB8 556 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 SBK1Q52WX2 424 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 NLRP9Q7RTR0 991 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 NSUN4Q96CB9 384 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 ABI2Q9NYB9 513 aaPredicted RBP13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 PREX2Q70Z35 1606 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 CCT8L1PA6NM43 557 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 LSP1P33241 339 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 AVPR1AP37288 418 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 NR1I3Q14994 352 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 GALNTL6Q49A17 601 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 ACAD10Q6JQN1 1059 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 NYAP2Q9P242 653 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 ENTPD3O75355 529 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 KRT20P35900 424 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 FOXO4P98177 505 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 TSGA10IPQ3SY00 556 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 CYP4A22Q5TCH4 519 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 BLOC1S5Q8TDH9 187 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 ISCA1Q9BUE6 129 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 EPC1Q9H2F5 836 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 KCTD10Q9H3F6 313 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 THRAP10827 490 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 ACADSP16219 412 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 STIP1P31948 543 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 KPNB1Q14974 876 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 DPP10Q8N608 796 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 CRAMP1Q96RY5 1269 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 ARHGEF3Q9NR81 526 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 RBM12Q9NTZ6 932 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 KLHL20Q9Y2M5 609 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 TARBP1Q13395 1621 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 ADGRA3Q8IWK6 1321 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 TIMM44O43615 452 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 CHRNB3Q05901 458 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 TRIM16LQ309B1 348 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 BOLA3Q53S33 107 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 SH2D3CQ8N5H7 860 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 RIT2Q99578 217 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 C17orf75Q9HAS0 396 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 LNPEPQ9UIQ6 1025 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 AFF2P51816 1311 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 GARTP22102 1010 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 GSTA3Q16772 222 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 KRT77Q7Z794 578 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 HERC6Q8IVU3 1022 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 ZNF786Q8N393 782 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 CENPTQ96BT3 561 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 RAD54BQ9Y620 910 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 TRIM13O60858 407 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 ZCCHC8Q6NZY4 707 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 C16orf86Q6ZW13 317 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 GLMNQ92990 594 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 PNMA8BQ9ULN7 279 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 GPR182O15218 404 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 ITGB3P05106 788 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 NR3C2P08235 984 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 UBTFL6P0CB48 400 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 RBP3P10745 1247 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 DENND1BQ6P3S1 775 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 SLC20A1Q8WUM9 679 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 VMP1Q96GC9 406 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 CAAP1Q9H8G2 361 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 PDP2Q9P2J9 529 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 DRG1Q9Y295 367 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 E9PBE3 544 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 NDUFB10O96000 172 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 JAK1P23458 1154 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 EPHB2P29323 1055 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 PDK2Q15119 407 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 FAM117BQ6P1L5 589 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 BARGINQ6ZT62 677 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 COL23A1Q86Y22 540 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 CD302Q8IX05 232 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 GINS4Q9BRT9 223 aa13.24□□□□□ -0.29
CCDC88C-204ENST00000389857 MGAT4DA6NG13 374 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 NBPF26B4DH59 902 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 PMPCBO75439 489 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 CNTFP26441 200 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 SUGP1Q8IWZ8 645 aaKnown RBP13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 USP38Q8NB14 1042 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 DDHD1Q8NEL9 900 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 UBXN6Q9BZV1 441 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 MYMKA6NI61 221 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 TTLL13PA6NNM8 815 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 M0QYT0 321 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 PSMD14O00487 310 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 ZNF284Q2VY69 593 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 NUDT12Q9BQG2 462 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 ZCCHC17Q9NP64 241 aaKnown RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms