RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 MCF2LO15068 1137 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 GPR182O15218 404 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 ALOX15BO15296 676 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 HUS1O60921 280 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 LRCH4O75427 683 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 FBXO21O94952 628 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 SDC4P31431 198 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 RFC1P35251 1148 aaPredicted RBP9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 LHX1P48742 406 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 NDST1P52848 882 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 GJA9P57773 515 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 RPL7AP62424 266 aaKnown RBP9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 CDK16Q00536 496 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 SLC6A3Q01959 620 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 SLC25A11Q02978 314 aaKnown RBP9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 BST2Q10589 180 aaKnown RBP9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 TAF1CQ15572 869 aaPredicted RBP9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 OASLQ15646 514 aaKnown RBP9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 PKDCCQ504Y2 493 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 ARMC3Q5W041 872 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 MAP1SQ66K74 1059 aaPredicted RBP9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 RGMBQ6NW40 437 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 LRRC31Q6UY01 552 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 ARHGEF18Q6ZSZ5 1173 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 SLC26A9Q7LBE3 791 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 STRADAQ7RTN6 431 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 DDX42Q86XP3 938 aaKnown RBP eCLIP9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 DNAAF5Q86Y56 855 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 PASD1Q8IV76 773 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 PPIL6Q8IXY8 311 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 ZDHHC14Q8IZN3 488 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 C7orf31Q8N865 590 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 ANKS4BQ8N8V4 417 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 KCTD6Q8NC69 237 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 APPL2Q8NEU8 664 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 SLC35F5Q8WV83 523 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 TRAPPC12Q8WVT3 735 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 KCTD13Q8WZ19 329 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 TFAP2BQ92481 460 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 C18orf25Q96B23 403 aaPredicted RBP9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 ARL8AQ96BM9 186 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 ALKBH8Q96BT7 664 aaKnown RBP9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 GRAMD1AQ96CP6 724 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 BTBD6Q96KE9 485 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 MTG1Q9BT17 334 aaPredicted RBP9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 ZMYND15Q9H091 742 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 BRD8Q9H0E9 1235 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 UPF3AQ9H1J1 476 aaKnown RBP9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 NEUROG2Q9H2A3 272 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 PRDM10Q9NQV6 1147 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 PRDM4Q9UKN5 801 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 DSEQ9UL01 958 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 USP18Q9UMW8 372 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 GIT1Q9Y2X7 761 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 RALGAPA2Q2PPJ7 1873 aa9.14□□□□□ -0.95
SNRNP40-202ENST00000373720 SF3B1O75533 1304 aaKnown RBP eCLIP9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 LRRD1A4D1F6 860 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 C2CD4BA6NLJ0 364 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 GOLGA8CPA6NN73 597 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 KPNA7A9QM74 516 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 HACD1B0YJ81 288 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 F8VP50 259 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 AP3B1O00203 1094 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 NCAM2O15394 837 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 TRAPPC3O43617 180 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 ZNF623O75123 536 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 TRUB2O95900 331 aaKnown RBP9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 GNRH1P01148 92 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 VTNP04004 478 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 ZNF286BP0CG31 522 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 PDGFRAP16234 1089 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 WARSP23381 471 aaKnown RBP9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 GNL1P36915 607 aaPredicted RBP9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 TM4SF4P48230 202 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 ZNF157P51786 506 aaPredicted RBP9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 ITGA8P53708 1063 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 HNRNPH2P55795 449 aaKnown RBP9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 ARL4CP56559 192 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 HUNKP57058 714 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 TAS2R40P59535 323 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 SARNPP82979 210 aaKnown RBP9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 PLCB3Q01970 1234 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 SNX17Q15036 470 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 MAPRE1Q15691 268 aaKnown RBP9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 PTGISQ16647 500 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 KLHL38Q2WGJ6 581 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 SEZ6Q53EL9 994 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 ERMARDQ5T6L9 678 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 ACBD5Q5T8D3 534 aaPredicted RBP9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 FAM102AQ5T9C2 384 aaPredicted RBP9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 C9orf57Q5W0N0 161 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 DENND1BQ6P3S1 775 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 CYS1Q717R9 158 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 PDZD4Q76G19 769 aaPredicted RBP9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 BEND5Q7L4P6 421 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 TADA2BQ86TJ2 420 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 CCNJLQ8IV13 435 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 PDIK1LQ8N165 341 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 SCML4Q8N228 414 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 CEP120Q8N960 986 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms