RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 CDYLQ9Y232 598 aa11.36□□□□□ -0.59
CLIP1-203ENST00000361654 UCHL3P15374 230 aa11.36□□□□□ -0.59
CLIP1-203ENST00000361654 SERPINB10P48595 397 aa11.36□□□□□ -0.59
CLIP1-203ENST00000361654 PPP2R2AP63151 447 aa11.36□□□□□ -0.59
CLIP1-203ENST00000361654 CCNJLQ8IV13 435 aa11.36□□□□□ -0.59
CLIP1-203ENST00000361654 SENP6Q9GZR1 1112 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-203ENST00000361654 CYP3A43Q9HB55 503 aa11.36□□□□□ -0.59
CLIP1-203ENST00000361654 DRG1Q9Y295 367 aaKnown RBP11.36□□□□□ -0.59
CLIP1-203ENST00000361654 PRDM15P57071 1507 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-203ENST00000361654 CCDC189A1A4V9 331 aa11.36□□□□□ -0.59
CLIP1-203ENST00000361654 SPTLC1O15269 473 aa11.36□□□□□ -0.59
CLIP1-203ENST00000361654 ADCY3O60266 1144 aa11.36□□□□□ -0.59
CLIP1-203ENST00000361654 CST8O60676 142 aa11.36□□□□□ -0.59
CLIP1-203ENST00000361654 CYP2A6P11509 494 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-203ENST00000361654 CUL2Q13617 745 aa11.36□□□□□ -0.59
CLIP1-203ENST00000361654 ITGA9Q13797 1035 aa11.36□□□□□ -0.59
CLIP1-203ENST00000361654 SLC18A3Q16572 532 aa11.36□□□□□ -0.59
CLIP1-203ENST00000361654 NBPF12Q5TAG4 269 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-203ENST00000361654 CEP68Q76N32 757 aa11.36□□□□□ -0.59
CLIP1-203ENST00000361654 DDX42Q86XP3 938 aaKnown RBP eCLIP11.36□□□□□ -0.59
CLIP1-203ENST00000361654 FRMD8P1Q9BZ68 369 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-203ENST00000361654 PDGFCQ9NRA1 345 aa11.36□□□□□ -0.59
CLIP1-203ENST00000361654 MYPNQ86TC9 1320 aa11.36□□□□□ -0.59
CLIP1-203ENST00000361654 ZNF839A8K0R7 811 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 PHF20L1A8MW92 1017 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 TRIM66O15016 1216 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 PHF2O75151 1096 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 RASSF9O75901 435 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 VTNP04004 478 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 BRD2P25440 801 aaKnown RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 FXR2P51116 673 aaKnown RBP eCLIP11.35□□□□□ -0.592e-6■■■■■ 27.8
CLIP1-203ENST00000361654 PPATQ06203 517 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 ILF2Q12905 390 aaKnown RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 MFSD10Q14728 455 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 NFRKBQ6P4R8 1299 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 TLK2Q86UE8 772 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 TXNRD3Q86VQ6 643 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 ICA1LQ8NDH6 482 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 CEP70Q8NHQ1 597 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 SLC35G2Q8TBE7 412 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 RBM15Q96T37 977 aaKnown RBP eCLIP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 FBXO28Q9NVF7 368 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 RRN3Q9NYV6 651 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 SSU72P8A0A1W2PR75 194 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 TBC1D4O60343 1298 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 MSH3P20585 1137 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 STIP1P31948 543 aaKnown RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 GALCP54803 685 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 PTGISQ16647 500 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 TRIM60Q495X7 471 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 FAM171A1Q5VUB5 890 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 SETD3Q86TU7 594 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 EXD1Q8NHP7 514 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 CMTM5Q96DZ9 223 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 PPP1R16AQ96I34 528 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 GLIS2Q9BZE0 524 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 RMND5AQ9H871 391 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 PSMC3IPQ9P2W1 217 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 GRID1Q9ULK0 1009 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 CBX4O00257 560 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 MTA2O94776 668 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 SNRPAP09012 282 aaKnown RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 FNDC3BQ53EP0 1204 aaKnown RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 DEPDC1Q5TB30 811 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 MOXD1Q6UVY6 613 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 CLYBLQ8N0X4 340 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 ACSF2Q96CM8 615 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 NFKBIL1Q9UBC1 381 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 TUBGCP4Q9UGJ1 667 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 TMX2Q9Y320 296 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 NEU2Q9Y3R4 380 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 A0A088AWK7 358 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 FYNP06241 537 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 ZNF10P21506 573 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 CENPCQ03188 943 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 HIC1Q14526 733 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 GRIK4Q16099 956 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 AMHR2Q16671 573 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 ZC2HC1CQ53FD0 456 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 ACOT1Q86TX2 421 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 CDR2LQ86X02 465 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 ARMC2Q8NEN0 867 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 CCDC126Q96EE4 140 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 EHD4Q9H223 541 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 MRPL17Q9NRX2 175 aaKnown RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 TRPV2Q9Y5S1 764 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 TOMM70O94826 608 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 SP3Q02447 781 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 RUNX1T1Q06455 604 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 PDK2Q15119 407 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 USP39Q53GS9 565 aaKnown RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 IQSEC1Q6DN90 963 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 SLFN11Q7Z7L1 901 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 SUGP1Q8IWZ8 645 aaKnown RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 STAMBPL1Q96FJ0 436 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 ZNF558Q96NG5 402 aa11.35□□□□□ -0.59
CLIP1-203ENST00000361654 MCCC1Q96RQ3 725 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-203ENST00000361654 OSMRQ99650 979 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms