RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 GDF15Q99988 308 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 CSNK1G1Q9HCP0 422 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 CYLDQ9NQC7 956 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 CDY1Q9Y6F8 540 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 LINC01553A4QN01 128 aa20.97■□□□□ 0.95
CLN3-205ENST00000359984 ADAM12O43184 909 aa20.97■□□□□ 0.95
CLN3-205ENST00000359984 RPL17P18621 184 aaKnown RBP20.97■□□□□ 0.95
CLN3-205ENST00000359984 CYP2F1P24903 491 aa20.97■□□□□ 0.95
CLN3-205ENST00000359984 BMPR1AP36894 532 aa20.97■□□□□ 0.95
CLN3-205ENST00000359984 GPR17Q13304 367 aa20.97■□□□□ 0.95
CLN3-205ENST00000359984 DNAJC24Q6P3W2 148 aa20.97■□□□□ 0.95
CLN3-205ENST00000359984 C3orf20Q8ND61 904 aa20.97■□□□□ 0.95
CLN3-205ENST00000359984 FBXO22Q8NEZ5 403 aa20.97■□□□□ 0.95
CLN3-205ENST00000359984 ALS2CR12Q96Q35 445 aa20.97■□□□□ 0.95
CLN3-205ENST00000359984 UBE2OQ9C0C9 1292 aaKnown RBP20.97■□□□□ 0.95
CLN3-205ENST00000359984 MIS12Q9H081 205 aa20.97■□□□□ 0.95
CLN3-205ENST00000359984 MRPL47Q9HD33 250 aaKnown RBP20.97■□□□□ 0.95
CLN3-205ENST00000359984 ABI2Q9NYB9 513 aaPredicted RBP20.97■□□□□ 0.95
CLN3-205ENST00000359984 WDR35Q9P2L0 1181 aa20.97■□□□□ 0.95
CLN3-205ENST00000359984 SCINQ9Y6U3 715 aa20.97■□□□□ 0.95
CLN3-205ENST00000359984 H0YGN5 161 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 GOLGA8SH3BPF8 625 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 BUB1BO60566 1050 aaPredicted RBP20.96■□□□□ 0.95
CLN3-205ENST00000359984 ARHGEF15O94989 841 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 CPB1P15086 417 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 ACADSBP45954 432 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 CFAP221Q4G0U5 840 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 SLC8B1Q6J4K2 584 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 LRRC57Q8N9N7 239 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 KCTD13Q8WZ19 329 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 ZNF592Q92610 1267 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 MCRS1Q96EZ8 462 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 FUBP3Q96I24 572 aaKnown RBP eCLIP20.96■□□□□ 0.95
CLN3-205ENST00000359984 PGLYRP2Q96PD5 576 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 CLSTN3Q9BQT9 956 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 TRIM7Q9C029 511 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 PCDHB5Q9Y5E4 795 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 PAPSS1O43252 624 aaPredicted RBP20.96■□□□□ 0.95
CLN3-205ENST00000359984 CTNNB1P35222 781 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 SNX16P57768 344 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 PPP1R15BQ5SWA1 713 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 OR6B2Q6IFH4 312 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 RNF19BQ6ZMZ0 732 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 FAM183BPQ6ZVS7 135 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 SCUBE3Q8IX30 993 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 ATAD1Q8NBU5 361 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 BTBD6Q96KE9 485 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 CALR3Q96L12 384 aaKnown RBP20.96■□□□□ 0.95
CLN3-205ENST00000359984 UBXN6Q9BZV1 441 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 GOLPH3Q9H4A6 298 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 DMAP1Q9NPF5 467 aaPredicted RBP20.96■□□□□ 0.95
CLN3-205ENST00000359984 STK39Q9UEW8 545 aa20.96■□□□□ 0.95
CLN3-205ENST00000359984 NLRC5Q86WI3 1866 aa20.95■□□□□ 0.94
CLN3-205ENST00000359984 HHLA1C9JL84 531 aa20.95■□□□□ 0.94
CLN3-205ENST00000359984 URODP06132 367 aa20.95■□□□□ 0.94
CLN3-205ENST00000359984 LCP1P13796 627 aa20.95■□□□□ 0.94
CLN3-205ENST00000359984 OR1D2P34982 312 aa20.95■□□□□ 0.94
CLN3-205ENST00000359984 SPRED2Q7Z698 418 aa20.95■□□□□ 0.94
CLN3-205ENST00000359984 FEZF2Q8TBJ5 459 aa20.95■□□□□ 0.94
CLN3-205ENST00000359984 AUTS2Q8WXX7 1259 aa20.95■□□□□ 0.94
CLN3-205ENST00000359984 C17orf80Q9BSJ5 609 aa20.95■□□□□ 0.94
CLN3-205ENST00000359984 ANAPC7Q9UJX3 599 aa20.95■□□□□ 0.94
CLN3-205ENST00000359984 MTMR11A4FU01 709 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 SIGLEC16A6NMB1 481 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 VNN2O95498 520 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 RPL7AP62424 266 aaKnown RBP20.94■□□□□ 0.94
CLN3-205ENST00000359984 ROR1Q01973 937 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 SLFN11Q7Z7L1 901 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 PIWIL1Q96J94 861 aaKnown RBP20.94■□□□□ 0.94
CLN3-205ENST00000359984 SELENOOQ9BVL4 669 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 ZBP1Q9H171 429 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 RWDD3Q9Y3V2 267 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 WDR27A2RRH5 827 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 TMEM191CA6NGB0 347 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 F8VP50 259 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 KRT3P12035 628 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 DNAJB2P25686 324 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 CASQ1P31415 396 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 SMARCB1Q12824 385 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 MESDQ14696 234 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 OLFML1Q6UWY5 402 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 GPRIN1Q7Z2K8 1008 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 DAAM2Q86T65 1068 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 MCEEQ96PE7 176 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 PLVAPQ9BX97 442 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 LRRC4Q9HBW1 653 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 ABCB6Q9NP58 842 aa20.94■□□□□ 0.94
CLN3-205ENST00000359984 MRPL17Q9NRX2 175 aaKnown RBP20.94■□□□□ 0.94
CLN3-205ENST00000359984 LILRB3O75022 631 aa20.93■□□□□ 0.94
CLN3-205ENST00000359984 FTCDO95954 541 aa20.93■□□□□ 0.94
CLN3-205ENST00000359984 CA3P07451 260 aa20.93■□□□□ 0.94
CLN3-205ENST00000359984 CTSAP10619 480 aa20.93■□□□□ 0.94
CLN3-205ENST00000359984 GRIK1P39086 918 aa20.93■□□□□ 0.94
CLN3-205ENST00000359984 MAGEA11P43364 429 aa20.93■□□□□ 0.94
CLN3-205ENST00000359984 SLC6A3Q01959 620 aa20.93■□□□□ 0.94
CLN3-205ENST00000359984 TAP1Q03518 808 aa20.93■□□□□ 0.94
CLN3-205ENST00000359984 ADIGQ0VDE8 80 aa20.93■□□□□ 0.94
CLN3-205ENST00000359984 RAB41Q5JT25 222 aa20.93■□□□□ 0.94
CLN3-205ENST00000359984 FAM102AQ5T9C2 384 aaPredicted RBP20.93■□□□□ 0.94
CLN3-205ENST00000359984 VSTM1Q6UX27 236 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms