RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 BANF1O75531 89 aa21.83■■□□□ 1.08
CCDC88B-203ENST00000359902 APOC2P02655 101 aa21.83■■□□□ 1.08
CCDC88B-203ENST00000359902 PFKMP08237 780 aa21.83■■□□□ 1.08
CCDC88B-203ENST00000359902 NR1H3Q13133 447 aa21.83■■□□□ 1.08
CCDC88B-203ENST00000359902 GRIK4Q16099 956 aa21.83■■□□□ 1.08
CCDC88B-203ENST00000359902 HIF1AQ16665 826 aa21.83■■□□□ 1.08
CCDC88B-203ENST00000359902 NUGGCQ68CJ6 796 aa21.83■■□□□ 1.08
CCDC88B-203ENST00000359902 CAPN12Q6ZSI9 719 aa21.83■■□□□ 1.08
CCDC88B-203ENST00000359902 NT5DC4Q86YG4 428 aa21.83■■□□□ 1.08
CCDC88B-203ENST00000359902 NAT8LQ8N9F0 302 aa21.83■■□□□ 1.08
CCDC88B-203ENST00000359902 KIF12Q96FN5 646 aa21.83■■□□□ 1.08
CCDC88B-203ENST00000359902 CNPY3Q9BT09 278 aa21.83■■□□□ 1.08
CCDC88B-203ENST00000359902 NT5C1AQ9BXI3 368 aa21.83■■□□□ 1.08
CCDC88B-203ENST00000359902 FAM124BQ9H5Z6 455 aaPredicted RBP21.83■■□□□ 1.08
CCDC88B-203ENST00000359902 TSPAN16Q9UKR8 245 aa21.83■■□□□ 1.08
CCDC88B-203ENST00000359902 C2CD4BA6NLJ0 364 aa21.82■■□□□ 1.08
CCDC88B-203ENST00000359902 ENDOD1O94919 500 aa21.82■■□□□ 1.08
CCDC88B-203ENST00000359902 STX2P32856 288 aa21.82■■□□□ 1.08
CCDC88B-203ENST00000359902 RAB6CQ53S08 254 aa21.82■■□□□ 1.08
CCDC88B-203ENST00000359902 CYP4V2Q6ZWL3 525 aaPredicted RBP21.82■■□□□ 1.08
CCDC88B-203ENST00000359902 ZNF467Q7Z7K2 595 aaPredicted RBP21.82■■□□□ 1.08
CCDC88B-203ENST00000359902 C12orf29Q8N999 325 aa21.82■■□□□ 1.08
CCDC88B-203ENST00000359902 CALN1Q9BXU9 219 aa21.82■■□□□ 1.08
CCDC88B-203ENST00000359902 RAB6CQ9H0N0 254 aa21.82■■□□□ 1.08
CCDC88B-203ENST00000359902 E5RJQ4 531 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 GPD1P21695 349 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 GRM5P41594 1212 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 GPX6P59796 221 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 EIF3EP60228 445 aaKnown RBP21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 FNBP1LQ5T0N5 605 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 PPP1R21Q6ZMI0 780 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 FAM183BPQ6ZVS7 135 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 ANKMY2Q8IV38 441 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 TTC39CQ8N584 583 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 RXFP2Q8WXD0 754 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 PIWIL1Q96J94 861 aaKnown RBP21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 CXCL16Q9H2A7 254 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 RSAD1Q9HA92 442 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 FAM47DPA6NHR8 397 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 STRNO43815 780 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 RASSF9O75901 435 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 PDGFRAP16234 1089 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 YBX3P16989 372 aaKnown RBP eCLIP21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 MMRN1Q13201 1228 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 MSS51Q4VC12 460 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 OR6B2Q6IFH4 312 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 MAGEB18Q96M61 343 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 SPON1Q9HCB6 807 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 USP15Q9Y4E8 981 aaPredicted RBP21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 PLXNB2O15031 1838 aa21.81■■□□□ 1.08
CCDC88B-203ENST00000359902 SMPD1P17405 629 aa21.8■■□□□ 1.08
CCDC88B-203ENST00000359902 PKN2Q16513 984 aaKnown RBP21.8■■□□□ 1.08
CCDC88B-203ENST00000359902 TRPM8Q7Z2W7 1104 aa21.8■■□□□ 1.08
CCDC88B-203ENST00000359902 FAM71DQ8N9W8 422 aa21.8■■□□□ 1.08
CCDC88B-203ENST00000359902 TGS1Q96RS0 853 aaKnown RBP21.8■■□□□ 1.08
CCDC88B-203ENST00000359902 PHACTR1Q9C0D0 580 aa21.8■■□□□ 1.08
CCDC88B-203ENST00000359902 GBA2Q9HCG7 927 aaPredicted RBP21.8■■□□□ 1.08
CCDC88B-203ENST00000359902 UBN1Q9NPG3 1134 aa21.8■■□□□ 1.08
CCDC88B-203ENST00000359902 CLUHO75153 1309 aa21.8■■□□□ 1.08
CCDC88B-203ENST00000359902 ARL4CP56559 192 aa21.8■■□□□ 1.08
CCDC88B-203ENST00000359902 WDR4P57081 412 aaKnown RBP21.8■■□□□ 1.08
CCDC88B-203ENST00000359902 C15orf59Q2T9L4 293 aaPredicted RBP21.8■■□□□ 1.08
CCDC88B-203ENST00000359902 ZNF410Q86VK4 478 aa21.8■■□□□ 1.08
CCDC88B-203ENST00000359902 SPATA18Q8TC71 538 aa21.8■■□□□ 1.08
CCDC88B-203ENST00000359902 SGSM3Q96HU1 749 aa21.8■■□□□ 1.08
CCDC88B-203ENST00000359902 MS4A4AQ96JQ5 239 aa21.8■■□□□ 1.08
CCDC88B-203ENST00000359902 SLC40A1Q9NP59 571 aa21.8■■□□□ 1.08
CCDC88B-203ENST00000359902 ZMYND8Q9ULU4 1186 aaPredicted RBP21.8■■□□□ 1.08
CCDC88B-203ENST00000359902 CITO14578 2027 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 TCRBV7S3A2A0A539 114 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 BTBD19C9JJ37 291 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 RBP3P10745 1247 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 CDH6P55285 790 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 RASA2Q15283 850 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 TAB3Q8N5C8 712 aaPredicted RBP21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 TRABDQ9H4I3 376 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 SLC24A2Q9UI40 661 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 MCF2LO15068 1137 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 SPAG7O75391 227 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 GRAP2O75791 330 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 MMP3P08254 477 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 HOXD8P13378 290 aaPredicted RBP21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 HOXA11P31270 313 aaPredicted RBP21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 KIZQ2M2Z5 673 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 GOLGA7BQ2TAP0 167 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 DUSP28Q4G0W2 176 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 PPP1R26Q5T8A7 1209 aaPredicted RBP21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 NPNTQ6UXI9 565 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 PYROXD1Q8WU10 500 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 MRPL45Q9BRJ2 306 aaKnown RBP21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 MIS12Q9H081 205 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 PPCSQ9HAB8 311 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 RABGEF1Q9UJ41 708 aa21.79■■□□□ 1.08
CCDC88B-203ENST00000359902 E7ESA3 106 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 NPTXRO95502 500 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 FOXN2P32314 431 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 RGS7P49802 495 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 MKRN3Q13064 507 aaKnown RBP21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 PMF1Q6P1K2 205 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms