RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 HPS5Q9UPZ3 1129 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 ADGBQ8N7X0 1667 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 OR1G1P47890 313 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 AQP5P55064 265 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 TRIM32Q13049 653 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 ZSWIM7Q19AV6 140 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 PDPK2PQ6A1A2 396 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 COL23A1Q86Y22 540 aaPredicted RBP16.6■□□□□ 0.25
COL18A1-203ENST00000359759 TRIM48Q8IWZ4 208 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 RPS6KB2Q9UBS0 482 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 SPTLC1O15269 473 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 TRAPPC3O43617 180 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 THRAP10827 490 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 SNX17Q15036 470 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 UNC45BQ8IWX7 931 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 VPS33BQ9H267 617 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 SERHL2Q9H4I8 314 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 ELP3Q9H9T3 547 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 PPCSQ9HAB8 311 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 SERHLQ9NQF3 203 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 UBAP1Q9NZ09 502 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 PIM2Q9P1W9 311 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 TMCC3Q9ULS5 477 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 AATKQ6ZMQ8 1374 aa16.6■□□□□ 0.25
COL18A1-203ENST00000359759 SETD1BQ9UPS6 1966 aaKnown RBP16.59■□□□□ 0.25
COL18A1-203ENST00000359759 C1orf232A0A0U1RR37 186 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 CLPTM1O96005 669 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 SCARF1Q14162 830 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 ITIH4Q14624 930 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 TDRD5Q8NAT2 981 aaKnown RBP16.59■□□□□ 0.25
COL18A1-203ENST00000359759 RMND5AQ9H871 391 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 CYLDQ9NQC7 956 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 KLHL20Q9Y2M5 609 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 PEX1O43933 1283 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 ENDOD1O94919 500 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 BGNP21810 368 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 ATF7IP2Q5U623 682 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 KDM7AQ6ZMT4 941 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 ZNF57Q68EA5 555 aaPredicted RBP16.59■□□□□ 0.25
COL18A1-203ENST00000359759 NAPEPLDQ6IQ20 393 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 EFL1Q7Z2Z2 1120 aaKnown RBP16.59■□□□□ 0.25
COL18A1-203ENST00000359759 STKLD1Q8NE28 680 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 DCDC2Q9UHG0 476 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 SNX8Q9Y5X2 465 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 TMEM253P0C7T8 217 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 ITGAXP20702 1163 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 HARS2P49590 506 aaKnown RBP16.59■□□□□ 0.25
COL18A1-203ENST00000359759 NCKAP1LP55160 1127 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 ATG16L2Q8NAA4 619 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 DNAJC5Q9H3Z4 198 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 VCPKMTQ9H867 229 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 DDX18Q9NVP1 670 aaKnown RBP16.59■□□□□ 0.25
COL18A1-203ENST00000359759 CYP39A1Q9NYL5 469 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 PADI4Q9UM07 663 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 NPTXRO95502 500 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 C4BPBP20851 252 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 PDIA5Q14554 519 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 STILQ15468 1287 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 KCTD21Q4G0X4 260 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 KCNT1Q5JUK3 1230 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 TCHHL1Q5QJ38 904 aaPredicted RBP16.59■□□□□ 0.25
COL18A1-203ENST00000359759 C11orf63Q6NUN7 778 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 LPCAT2Q7L5N7 544 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 TPCN2Q8NHX9 752 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 TRPC4APQ8TEL6 797 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 CTNNAL1Q9UBT7 734 aa16.59■□□□□ 0.25
COL18A1-203ENST00000359759 AFF2P51816 1311 aa16.58■□□□□ 0.25
COL18A1-203ENST00000359759 RHOBTB3O94955 611 aa16.58■□□□□ 0.25
COL18A1-203ENST00000359759 RGS2P41220 211 aa16.58■□□□□ 0.25
COL18A1-203ENST00000359759 KRR1Q13601 381 aaKnown RBP16.58■□□□□ 0.25
COL18A1-203ENST00000359759 SV2CQ496J9 727 aa16.58■□□□□ 0.25
COL18A1-203ENST00000359759 CCDC157Q569K6 752 aa16.58■□□□□ 0.25
COL18A1-203ENST00000359759 UGT3A1Q6NUS8 523 aa16.58■□□□□ 0.25
COL18A1-203ENST00000359759 CDH24Q86UP0 819 aa16.58■□□□□ 0.25
COL18A1-203ENST00000359759 CATSPER2Q96P56 530 aa16.58■□□□□ 0.25
COL18A1-203ENST00000359759 GLRA3O75311 464 aa16.58■□□□□ 0.25
COL18A1-203ENST00000359759 ABCB1P08183 1280 aaPredicted RBP16.58■□□□□ 0.25
COL18A1-203ENST00000359759 ITGA4P13612 1032 aa16.58■□□□□ 0.25
COL18A1-203ENST00000359759 DGKDQ16760 1214 aa16.58■□□□□ 0.25
COL18A1-203ENST00000359759 SEPHS2Q99611 448 aa16.58■□□□□ 0.25
COL18A1-203ENST00000359759 EFCAB1Q9HAE3 211 aa16.58■□□□□ 0.25
COL18A1-203ENST00000359759 RPS6KL1Q9Y6S9 549 aa16.58■□□□□ 0.25
COL18A1-203ENST00000359759 SNPHO15079 494 aa16.58■□□□□ 0.24
COL18A1-203ENST00000359759 SGPL1O95470 568 aa16.58■□□□□ 0.24
COL18A1-203ENST00000359759 MT-CO1P00395 513 aa16.58■□□□□ 0.24
COL18A1-203ENST00000359759 PSMA3P25788 255 aa16.58■□□□□ 0.24
COL18A1-203ENST00000359759 SERPINB8P50452 374 aa16.58■□□□□ 0.24
COL18A1-203ENST00000359759 WDR36Q8NI36 951 aaKnown RBP16.58■□□□□ 0.24
COL18A1-203ENST00000359759 UTP15Q8TED0 518 aaKnown RBP16.58■□□□□ 0.24
COL18A1-203ENST00000359759 NACC2Q96BF6 587 aa16.58■□□□□ 0.24
COL18A1-203ENST00000359759 KLHL1Q9NR64 748 aa16.58■□□□□ 0.24
COL18A1-203ENST00000359759 ITGB3P05106 788 aa16.58■□□□□ 0.24
COL18A1-203ENST00000359759 BAATQ14032 418 aaPredicted RBP16.58■□□□□ 0.24
COL18A1-203ENST00000359759 KBTBD12Q3ZCT8 623 aa16.58■□□□□ 0.24
COL18A1-203ENST00000359759 EPHX4Q8IUS5 362 aa16.58■□□□□ 0.24
COL18A1-203ENST00000359759 TSEN34Q9BSV6 310 aaKnown RBP16.58■□□□□ 0.24
COL18A1-203ENST00000359759 MKNK1Q9BUB5 465 aa16.58■□□□□ 0.24
COL18A1-203ENST00000359759 TMEM8AQ9HCN3 771 aa16.58■□□□□ 0.24
COL18A1-203ENST00000359759 AVENQ9NQS1 362 aaPredicted RBP16.58■□□□□ 0.24
COL18A1-203ENST00000359759 MAN1C1Q9NR34 630 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms