RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 NETO2Q8NC67 525 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 OR9Q1Q8NGQ5 310 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 ACER1Q8TDN7 264 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 GLMNQ92990 594 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 CATSPER2Q96P56 530 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 C17orf80Q9BSJ5 609 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 ATXN3LQ9H3M9 355 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 PCDHGB4Q9UN71 923 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 CHKBQ9Y259 395 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 COPG1Q9Y678 874 aaKnown RBP9.01□□□□□ -0.97
RTN3-202ENST00000339997 RGPD1P0DJD0 1748 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 A8MUI8 341 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 ITGB3P05106 788 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 TXNP10599 105 aaKnown RBP9.01□□□□□ -0.97
RTN3-202ENST00000339997 CHRM3P20309 590 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 FGFR2P21802 821 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 PTPN4P29074 926 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 CCNA1P78396 465 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 ACAD10Q6JQN1 1059 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 DPY19L2Q6NUT2 758 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 DNAJC14Q6Y2X3 702 aaPredicted RBP9.01□□□□□ -0.97
RTN3-202ENST00000339997 FAM162AQ96A26 154 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 SH3KBP1Q96B97 665 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 TMEM79Q9BSE2 394 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 BRCA2P51587 3418 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 QRICH2Q9H0J4 1663 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 BAIAP3O94812 1187 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 ATP6V1B2P21281 511 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 SFNP31947 248 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 MARCKSL1P49006 195 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 TWF1Q12792 350 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 ITIH4Q14624 930 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 FAM83EQ2M2I3 478 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 SUPT20HL1Q3ZLR7 823 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 ATP13A4Q4VNC1 1196 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 CDC42EP5Q6NZY7 148 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 C16orf89Q6UX73 402 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 MIEF2Q96C03 454 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 MRPL40Q9NQ50 206 aaKnown RBP9.01□□□□□ -0.97
RTN3-202ENST00000339997 PAK5Q9P286 719 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 FEM1BQ9UK73 627 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 CDV3Q9UKY7 258 aaKnown RBP9.01□□□□□ -0.97
RTN3-202ENST00000339997 PLEKHG2Q9H7P9 1386 aa9.01□□□□□ -0.97
RTN3-202ENST00000339997 TMEM247A6NEH6 219 aa9□□□□□ -0.97
RTN3-202ENST00000339997 DDX3XO00571 662 aaKnown RBP eCLIP9□□□□□ -0.976e-22■■■□□ 17.7
RTN3-202ENST00000339997 TRAPPC3O43617 180 aa9□□□□□ -0.97
RTN3-202ENST00000339997 DGAT1O75907 488 aa9□□□□□ -0.97
RTN3-202ENST00000339997 ELK3P41970 407 aa9□□□□□ -0.97
RTN3-202ENST00000339997 GIT2Q14161 759 aa9□□□□□ -0.97
RTN3-202ENST00000339997 QPCTQ16769 361 aa9□□□□□ -0.97
RTN3-202ENST00000339997 LLGL2Q6P1M3 1020 aa9□□□□□ -0.97
RTN3-202ENST00000339997 GPR141Q7Z602 305 aa9□□□□□ -0.97
RTN3-202ENST00000339997 ARL10Q8N8L6 244 aa9□□□□□ -0.97
RTN3-202ENST00000339997 SH3GL1Q99961 368 aa9□□□□□ -0.97
RTN3-202ENST00000339997 ECSITQ9BQ95 431 aa9□□□□□ -0.97
RTN3-202ENST00000339997 MMTAG2Q9BU76 263 aaKnown RBP9□□□□□ -0.97
RTN3-202ENST00000339997 MAGEB5Q9BZ81 275 aa9□□□□□ -0.97
RTN3-202ENST00000339997 ILKAPQ9H0C8 392 aaPredicted RBP9□□□□□ -0.97
RTN3-202ENST00000339997 TMEM8AQ9HCN3 771 aa9□□□□□ -0.97
RTN3-202ENST00000339997 TUFT1Q9NNX1 390 aa9□□□□□ -0.97
RTN3-202ENST00000339997 CD274Q9NZQ7 290 aa9□□□□□ -0.97
RTN3-202ENST00000339997 CDY2AQ9Y6F7 541 aa9□□□□□ -0.97
RTN3-202ENST00000339997 CDY1Q9Y6F8 540 aa9□□□□□ -0.97
RTN3-202ENST00000339997 COL15A1P39059 1388 aa9□□□□□ -0.97
RTN3-202ENST00000339997 TMEM131LA2VDJ0 1609 aa9□□□□□ -0.97
RTN3-202ENST00000339997 FAM86B1E9PN63 330 aa9□□□□□ -0.97
RTN3-202ENST00000339997 EEF2KO00418 725 aaKnown RBP9□□□□□ -0.97
RTN3-202ENST00000339997 ZNF263O14978 683 aa9□□□□□ -0.97
RTN3-202ENST00000339997 FAM200BP0CF97 657 aa9□□□□□ -0.97
RTN3-202ENST00000339997 NCAM1P13591 858 aa9□□□□□ -0.97
RTN3-202ENST00000339997 SLC25A3Q00325 362 aa9□□□□□ -0.97
RTN3-202ENST00000339997 PPIDQ08752 370 aaKnown RBP9□□□□□ -0.97
RTN3-202ENST00000339997 MAPRE2Q15555 327 aa9□□□□□ -0.97
RTN3-202ENST00000339997 POTEAQ6S8J7 498 aa9□□□□□ -0.97
RTN3-202ENST00000339997 PCYOX1LQ8NBM8 494 aa9□□□□□ -0.97
RTN3-202ENST00000339997 CATSPER1Q8NEC5 780 aa9□□□□□ -0.97
RTN3-202ENST00000339997 ACTRT1Q8TDG2 376 aa9□□□□□ -0.97
RTN3-202ENST00000339997 MARK4Q96L34 752 aa9□□□□□ -0.97
RTN3-202ENST00000339997 TAAR1Q96RJ0 339 aa9□□□□□ -0.97
RTN3-202ENST00000339997 GCOM2Q9BZD3 368 aaPredicted RBP9□□□□□ -0.97
RTN3-202ENST00000339997 TMEM39BQ9GZU3 492 aa9□□□□□ -0.97
RTN3-202ENST00000339997 TMEM165Q9HC07 324 aa9□□□□□ -0.97
RTN3-202ENST00000339997 LRRC4BQ9NT99 713 aa9□□□□□ -0.97
RTN3-202ENST00000339997 PRPF4O43172 522 aaKnown RBP eCLIP9□□□□□ -0.973e-8■□□□□ 10.6
RTN3-202ENST00000339997 TBC1D4O60343 1298 aa9□□□□□ -0.97
RTN3-202ENST00000339997 SH3BGRLO75368 114 aa9□□□□□ -0.97
RTN3-202ENST00000339997 KRT36O76013 467 aa9□□□□□ -0.97
RTN3-202ENST00000339997 FLT3P36888 993 aa9□□□□□ -0.97
RTN3-202ENST00000339997 GRIK1P39086 918 aa9□□□□□ -0.97
RTN3-202ENST00000339997 CRADDP78560 199 aa9□□□□□ -0.97
RTN3-202ENST00000339997 MRPS22P82650 360 aaKnown RBP9□□□□□ -0.97
RTN3-202ENST00000339997 TBX2Q13207 712 aaPredicted RBP9□□□□□ -0.97
RTN3-202ENST00000339997 SYDE1Q6ZW31 735 aaPredicted RBP9□□□□□ -0.97
RTN3-202ENST00000339997 ACOT1Q86TX2 421 aa9□□□□□ -0.97
RTN3-202ENST00000339997 CLVS1Q8IUQ0 354 aaPredicted RBP9□□□□□ -0.97
RTN3-202ENST00000339997 TBC1D16Q8TBP0 767 aa9□□□□□ -0.97
RTN3-202ENST00000339997 TMC2Q8TDI7 906 aa9□□□□□ -0.97
RTN3-202ENST00000339997 RUBCNQ92622 972 aa9□□□□□ -0.97
RTN3-202ENST00000339997 CAVIN3Q969G5 261 aa9□□□□□ -0.97
RTN3-202ENST00000339997 MTERF3Q96E29 417 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms