RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 CAPN14A8MX76 684 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 B2RBV5 119 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 RAD51BO15315 384 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 SNAPC5O75971 98 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 PMLP29590 882 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 ARL1P40616 181 aaPredicted RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 ALDH3B2P48448 385 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 ITGADQ13349 1161 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 NAB1Q13506 487 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 DSC3Q14574 896 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TNFAIP8L3Q5GJ75 292 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 SHC4Q6S5L8 630 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 MRPL10Q7Z7H8 261 aaKnown RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TTC7BQ86TV6 843 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 CCDC105Q8IYK2 499 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 REXO1Q8N1G1 1221 aaKnown RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 OR5T2Q8NGG2 359 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 NLRP3Q96P20 1036 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TRIM56Q9BRZ2 755 aaKnown RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TMEM79Q9BSE2 394 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TEKT3Q9BXF9 490 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 UCK1Q9HA47 277 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 REV1Q9UBZ9 1251 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 SLC7A8Q9UHI5 535 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 EIF3LQ9Y262 564 aaKnown RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 NESP48681 1621 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 NCAPD2Q15021 1401 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 EFCAB10A6NFE3 127 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 UBAP1LF5GYI3 381 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 B4GALT4O60513 344 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 RNASEH1O60930 286 aaKnown RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 NPR1P16066 1061 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 CTNNA2P26232 953 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 RPA1P27694 616 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 RXRGP48443 463 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 MOGSQ13724 837 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 HERC3Q15034 1050 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 PDK4Q16654 411 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 SHROOM1Q2M3G4 852 aaPredicted RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 GARNL3Q5VVW2 1013 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 DCLRE1AQ6PJP8 1040 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 RASGEF1CQ8N431 466 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 NATD1Q8N6N6 113 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TEX47Q8TBZ9 253 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 SYTL5Q8TDW5 730 aaPredicted RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 VTI1AQ96AJ9 217 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 SLC10A4Q96EP9 437 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TP63Q9H3D4 680 aaPredicted RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 MLXIPQ9HAP2 919 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 SPC25Q9HBM1 224 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 KLHL42Q9P2K6 505 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 IPO11Q9UI26 975 aaKnown RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TSPYL4Q9UJ04 414 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TRIM33Q9UPN9 1127 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 CBY1Q9Y3M2 126 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TESMINQ9Y4I5 508 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 AP4B1Q9Y6B7 739 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 CSNK1G3Q9Y6M4 447 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TRIM75PA6NK02 468 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 PI4K2BG5E9Z4 385 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 SNPHO15079 494 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 SHBGP04278 402 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TFAP2AP05549 437 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 SNRPAP09012 282 aaKnown RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 ITIH2P19823 946 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 CCNA2P20248 432 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 ABCB4P21439 1286 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 PDIA3P30101 505 aaKnown RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 PHKA1P46020 1223 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 PLTPP55058 493 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 MYBPC1Q00872 1141 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 GHRHRQ02643 423 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 RALGDSQ12967 914 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 AP3B2Q13367 1082 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 RABGAP1LQ5R372 815 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 PPM1LQ5SGD2 360 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 OGFRL1Q5TC84 451 aaPredicted RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 GTF2IRD2BQ6EKJ0 949 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 DRICH1Q6PGQ1 229 aaPredicted RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 CLNKQ7Z7G1 428 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 METTL3Q86U44 580 aaKnown RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 GTF2IRD2Q86UP8 949 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 C12orf56Q8IXR9 622 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 AADATQ8N5Z0 425 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 PACRGLQ8N7B6 248 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 KLHL6Q8WZ60 621 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 ALG1Q9BT22 464 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 ATP13A2Q9NQ11 1180 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF229Q9UJW7 825 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 GRIP1Q9Y3R0 1128 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 PCDHB12Q9Y5F1 795 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 BTN3A1O00481 513 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 MAGEB3O15480 346 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 PRPF4O43172 522 aaKnown RBP eCLIP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 DAPK3O43293 454 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 GATCO43716 136 aaKnown RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 APOC1P02654 83 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 KRT18P05783 430 aaKnown RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 RARBP10826 455 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 GRK3P35626 688 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms