RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 GIPC2Q8TF65 315 aa16.27■□□□□ 0.19
PDLIM5-202ENST00000318007 CLEC4CQ8WTT0 213 aa16.27■□□□□ 0.19
PDLIM5-202ENST00000318007 PPP1R13BQ96KQ4 1090 aa16.27■□□□□ 0.19
PDLIM5-202ENST00000318007 LACRTQ9GZZ8 138 aa16.27■□□□□ 0.19
PDLIM5-202ENST00000318007 SEC24AO95486 1093 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 ERBB2P04626 1255 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 CCDC175P0C221 793 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 NDUFV1P49821 464 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 SLC8A3P57103 927 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 CENPCQ03188 943 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 ADIGQ0VDE8 80 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 SMC1AQ14683 1233 aaKnown RBP16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 PKDCCQ504Y2 493 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 ACAD10Q6JQN1 1059 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 ERICH1Q86X53 443 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 SCUBE3Q8IX30 993 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 ZNF653Q96CK0 615 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 ARHGEF26Q96DR7 871 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 PIWIL1Q96J94 861 aaKnown RBP16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 ADAM22Q9P0K1 906 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 BACE2Q9Y5Z0 518 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 MACROD2A1Z1Q3 448 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 CARNS1A5YM72 827 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 PRRG1O14668 218 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 TGM5O43548 720 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 RTN2O75298 545 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 GRAP2O75791 330 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 RB1P06400 928 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 RRM1P23921 792 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 STILQ15468 1287 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 NFE2Q16621 373 aaPredicted RBP16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 PTPROQ16827 1216 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 MRPL43Q8N983 215 aaKnown RBP16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 SCAMP5Q8TAC9 235 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 SLC35F5Q8WV83 523 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 ZNF576Q9H609 170 aa16.26■□□□□ 0.19
PDLIM5-202ENST00000318007 SOX1O00570 391 aaPredicted RBP16.25■□□□□ 0.19
PDLIM5-202ENST00000318007 BUB1O43683 1085 aa16.25■□□□□ 0.19
PDLIM5-202ENST00000318007 LPXNO60711 386 aa16.25■□□□□ 0.19
PDLIM5-202ENST00000318007 LILRB3O75022 631 aa16.25■□□□□ 0.19
PDLIM5-202ENST00000318007 GTF2F1P35269 517 aaKnown RBP eCLIP16.25■□□□□ 0.19
PDLIM5-202ENST00000318007 RNASE9P60153 205 aaKnown RBP16.25■□□□□ 0.19
PDLIM5-202ENST00000318007 SMAD3P84022 425 aaKnown RBP16.25■□□□□ 0.19
PDLIM5-202ENST00000318007 MTMR3Q13615 1198 aa16.25■□□□□ 0.19
PDLIM5-202ENST00000318007 TRIM72Q6ZMU5 477 aa16.25■□□□□ 0.19
PDLIM5-202ENST00000318007 ZNF461Q8TAF7 563 aa16.25■□□□□ 0.19
PDLIM5-202ENST00000318007 LRCH3Q96II8 777 aa16.25■□□□□ 0.19
PDLIM5-202ENST00000318007 KLHL5Q96PQ7 755 aa16.25■□□□□ 0.19
PDLIM5-202ENST00000318007 LHX5Q9H2C1 402 aa16.25■□□□□ 0.19
PDLIM5-202ENST00000318007 DMAP1Q9NPF5 467 aaPredicted RBP16.25■□□□□ 0.19
PDLIM5-202ENST00000318007 MAGED2Q9UNF1 606 aaPredicted RBP16.25■□□□□ 0.19
PDLIM5-202ENST00000318007 LZTS1Q9Y250 596 aa16.25■□□□□ 0.19
PDLIM5-202ENST00000318007 ZKSCAN5Q9Y2L8 839 aa16.25■□□□□ 0.19
PDLIM5-202ENST00000318007 COL4A4P53420 1690 aaPredicted RBP16.25■□□□□ 0.19
PDLIM5-202ENST00000318007 GABBR2O75899 941 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 LSM8O95777 96 aaKnown RBP16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 NAP1L1P55209 391 aaKnown RBP16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 KRT83P78385 493 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 CFAP221Q4G0U5 840 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 MON1BQ7L1V2 547 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 MCOLN2Q8IZK6 566 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 CTNNBL1Q8WYA6 563 aaPredicted RBP16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 SAMD11Q96NU1 681 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 PRDM12Q9H4Q4 367 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 IGFLR1Q9H665 355 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 OSGEPQ9NPF4 335 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 GUCA1BQ9UMX6 200 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 PAXBP1Q9Y5B6 917 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 XPO1O14980 1071 aaKnown RBP16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 LCA5LO95447 670 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 ADH1AP07327 375 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 H2AFZP0C0S5 128 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 ATF2P15336 505 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 MMP8P22894 467 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 ELF1P32519 619 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 TKTL1P51854 596 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 VAV2P52735 878 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 TAF5Q15542 800 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 ZNF697Q5TEC3 545 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 OR6B2Q6IFH4 312 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 H2AFVQ71UI9 128 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 SLC7A14Q8TBB6 771 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 IPO4Q8TEX9 1081 aaKnown RBP16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 BTBD6Q96KE9 485 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 NOX5Q96PH1 765 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 EMILIN2Q9BXX0 1053 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 IRX2Q9BZI1 471 aaPredicted RBP16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 ISCUQ9H1K1 167 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 LRRC4Q9HBW1 653 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 CNOT8Q9UFF9 292 aaKnown RBP16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 NENFQ9UMX5 172 aa16.24■□□□□ 0.19
PDLIM5-202ENST00000318007 COL6A3P12111 3177 aa16.23■□□□□ 0.19
PDLIM5-202ENST00000318007 ATP8B3O60423 1300 aa16.23■□□□□ 0.19
PDLIM5-202ENST00000318007 PTPRDP23468 1912 aa16.23■□□□□ 0.19
PDLIM5-202ENST00000318007 SPDYE4A6NLX3 237 aa16.23■□□□□ 0.19
PDLIM5-202ENST00000318007 USP17L7P0C7H9 530 aa16.23■□□□□ 0.19
PDLIM5-202ENST00000318007 SETSIPP0DME0 302 aa16.23■□□□□ 0.19
PDLIM5-202ENST00000318007 GZMAP12544 262 aa16.23■□□□□ 0.19
PDLIM5-202ENST00000318007 ATF6P18850 670 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms