RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ANXA9O76027 345 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 SNRPFP62306 86 aaKnown RBP14.36□□□□□ -0.11
CSPG4-201ENST00000308508 IL5RAQ01344 420 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 EIF2B5Q13144 721 aaKnown RBP14.36□□□□□ -0.11
CSPG4-201ENST00000308508 SNRNP48Q6IEG0 339 aaKnown RBP14.36□□□□□ -0.11
CSPG4-201ENST00000308508 DDX53Q86TM3 631 aaKnown RBP14.36□□□□□ -0.11
CSPG4-201ENST00000308508 MTDHQ86UE4 582 aaKnown RBP14.36□□□□□ -0.11
CSPG4-201ENST00000308508 EID3Q8N140 333 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 FAM210AQ96ND0 272 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 LSM7Q9UK45 103 aaKnown RBP14.36□□□□□ -0.11
CSPG4-201ENST00000308508 GSTM1P09488 218 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 WARSP23381 471 aaKnown RBP14.36□□□□□ -0.11
CSPG4-201ENST00000308508 ST8SIA6P61647 398 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 SNRNP35Q16560 246 aaKnown RBP14.36□□□□□ -0.11
CSPG4-201ENST00000308508 IL31Q6EBC2 164 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 SIRT2Q8IXJ6 389 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 PIDD1Q9HB75 910 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 ALG6Q9Y672 507 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 FOXN1O15353 648 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 FAM20BO75063 409 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 GHRP10912 638 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 GUCY1A2P33402 732 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 EPS8Q12929 822 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 TRAF3Q13114 568 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 NFYCQ13952 458 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 UXS1Q8NBZ7 420 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 SPATA33Q96N06 139 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 GPR63Q9BZJ6 419 aa14.36□□□□□ -0.11
CSPG4-201ENST00000308508 PDS5AQ29RF7 1337 aaKnown RBP14.35□□□□□ -0.11
CSPG4-201ENST00000308508 CST8O60676 142 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 AKAP5P24588 427 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 STIP1P31948 543 aaKnown RBP14.35□□□□□ -0.11
CSPG4-201ENST00000308508 TMEM132DQ14C87 1099 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 MAPK11Q15759 364 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 FAM98BQ52LJ0 330 aaKnown RBP14.35□□□□□ -0.11
CSPG4-201ENST00000308508 ZRANB3Q5FWF4 1079 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 MOSPD2Q8NHP6 518 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 UBE2OQ9C0C9 1292 aaKnown RBP14.35□□□□□ -0.11
CSPG4-201ENST00000308508 PCDHA10Q9Y5I2 948 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 USP17L10C9JJH3 530 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 GYPCP04921 128 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 CDC42EP1Q00587 391 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 STX4Q12846 297 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 ATP6AP1LQ52LC2 224 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 EPS8L3Q8TE67 593 aaKnown RBP14.35□□□□□ -0.11
CSPG4-201ENST00000308508 CASKIN2Q8WXE0 1202 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 USP21Q9UK80 565 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 RAD54BQ9Y620 910 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 MYO5CQ9NQX4 1742 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 ALOX12P18054 663 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 ALFQ53S48 1182 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 SDE2Q6IQ49 451 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 MICALL2Q8IY33 904 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 CAMKK2Q96RR4 588 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 MMADHCQ9H3L0 296 aaPredicted RBP14.35□□□□□ -0.11
CSPG4-201ENST00000308508 GTF2A1LQ9UNN4 478 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 SKAP2O75563 359 aaPredicted RBP14.35□□□□□ -0.11
CSPG4-201ENST00000308508 ZNF682O95780 498 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 RBP3P10745 1247 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 SNX30Q5VWJ9 437 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 SETD9Q8NE22 299 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 USP33Q8TEY7 942 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 TMEM120AQ9BXJ8 343 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 JPH1Q9HDC5 661 aaPredicted RBP14.35□□□□□ -0.11
CSPG4-201ENST00000308508 CYLDQ9NQC7 956 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 NCAPD2Q15021 1401 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 PDHBP11177 359 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 GPD1P21695 349 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 SLC34A1Q06495 639 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 FMR1Q06787 632 aaKnown RBP eCLIP14.35□□□□□ -0.11
CSPG4-201ENST00000308508 ALX1Q15699 326 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 LRRC74BQ6ZQY2 392 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 KIAA0408Q6ZU52 694 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 HPS3Q969F9 1004 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 DDX18Q9NVP1 670 aaKnown RBP14.35□□□□□ -0.11
CSPG4-201ENST00000308508 TPRKBQ9Y3C4 175 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 GMEB1Q9Y692 573 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 AQP5P55064 265 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 SNX17Q15036 470 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 KCNV1Q6PIU1 500 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 SGMS1Q86VZ5 419 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 KYQ8NBH2 561 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 TPCN2Q8NHX9 752 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 DNAJC7Q99615 494 aa14.35□□□□□ -0.11
CSPG4-201ENST00000308508 CYP2E1P05181 493 aaPredicted RBP14.34□□□□□ -0.11
CSPG4-201ENST00000308508 NR5A2O00482 541 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 STK25O00506 426 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 SUPT7LO94864 414 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 IL18RAPO95256 599 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 POU1F1P28069 291 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 ATP8B4Q8TF62 1192 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 USP13Q92995 863 aaPredicted RBP14.34□□□□□ -0.11
CSPG4-201ENST00000308508 TSEN34Q9BSV6 310 aaKnown RBP14.34□□□□□ -0.11
CSPG4-201ENST00000308508 POLR1AO95602 1720 aaPredicted RBP14.34□□□□□ -0.11
CSPG4-201ENST00000308508 FAM220BPB1ANY3 271 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 EPHA7Q15375 998 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 PDPK2PQ6A1A2 396 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 SLC25A41Q8N5S1 370 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 MZF1P28698 734 aaPredicted RBP14.34□□□□□ -0.11
CSPG4-201ENST00000308508 MAPKAPK2P49137 400 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms