RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 ATP1A3P13637 1013 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 GJA1P17302 382 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 ACO1P21399 889 aaKnown RBP11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 DDX6P26196 483 aaKnown RBP eCLIP11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 CCR2P41597 374 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 SLC5A3P53794 718 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 CACNA2D1P54289 1103 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 BCAT1P54687 386 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 CYP4F8P98187 520 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 MTMR3Q13615 1198 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 IQCB1Q15051 598 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 GOLGA7BQ2TAP0 167 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 GPR158Q5T848 1215 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 PAQR9Q6ZVX9 377 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 LUZP1Q86V48 1076 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 RNF135Q8IUD6 432 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 NUP93Q8N1F7 819 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 SHKBP1Q8TBC3 707 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 FBXO32Q969P5 355 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 MCRS1Q96EZ8 462 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 LRRC3Q9BY71 257 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 PNPLA8Q9NP80 782 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 SIX2Q9NPC8 291 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 IGSF9Q9P2J2 1179 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 ZMYM5Q9UJ78 669 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 DNAJC12Q9UKB3 198 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 TSPAN16Q9UKR8 245 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 DAAM1Q9Y4D1 1078 aa11.64□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 TNFRSF10AO00220 468 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 MED7O43513 233 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 HMGA1P17096 107 aaKnown RBP11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 YWHAQP27348 245 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 GNA15P30679 374 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 PPP3CCP48454 512 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 APBA1Q02410 837 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 BST2Q10589 180 aaKnown RBP11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 KCNMA1Q12791 1236 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 SYCP1Q15431 976 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 KLHDC7AQ5VTJ3 777 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 SMYD5Q6GMV2 418 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 CLEC20AQ6ZU45 233 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 GAREM2Q75VX8 874 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 PDZD8Q8NEN9 1154 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 NEK11Q8NG66 645 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 NXPE3Q969Y0 559 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 MYRFLQ96LU7 910 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 KCNK16Q96T55 309 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 SMOQ99835 787 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 DUSP16Q9BY84 665 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 HSD3B7Q9H2F3 369 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 FBXO44Q9H4M3 255 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 CSNK1G1Q9HCP0 422 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 TRPC7Q9HCX4 862 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 PLCB1Q9NQ66 1216 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 FAM207AQ9NSI2 230 aaPredicted RBP11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 TMEM30AQ9NV96 361 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 COMMD8Q9NX08 183 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 TRPM5Q9NZQ8 1165 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 LIMD1Q9UGP4 676 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 FHOD1Q9Y613 1164 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 UNC80Q8N2C7 3258 aa11.63□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 TICRRQ7Z2Z1 1910 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 M0QYV0 167 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 DPYSL4O14531 572 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 THAP12O43422 761 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 MOSPD3O75425 235 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 BEST1O76090 585 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 SETSIPP0DME0 302 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 UCHL3P15374 230 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 BRD2P25440 801 aaKnown RBP11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 AVPR1AP37288 418 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 PDE6CP51160 858 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 ZNF132P52740 706 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 PTK2Q05397 1052 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 PTPN21Q16825 1174 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 ANKRD52Q8NB46 1076 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 ZSCAN18Q8TBC5 510 aaPredicted RBP11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 OVCA2Q8WZ82 227 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 SHC3Q92529 594 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 SPAG5Q96R06 1193 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 TTLL2Q9BWV7 592 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 TASP1Q9H6P5 420 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 IL21Q9HBE4 155 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 ZFP14Q9HCL3 533 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 CD320Q9NPF0 282 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 MUTYHQ9UIF7 546 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 SORCS3Q9UPU3 1222 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 NUMBLQ9Y6R0 609 aa11.62□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 KIF26AQ9ULI4 1882 aaPredicted RBP11.61□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 TRAV19A0A0A6YYK7 116 aa11.61□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 LRRC10BA6NIK2 292 aa11.61□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 RNF225M0QZC1 329 aaPredicted RBP11.61□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 O00370 1275 aa11.61□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 XPO1O14980 1071 aaKnown RBP11.61□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 DCXO43602 365 aa11.61□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 TADA3O75528 432 aa11.61□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 ABL1P00519 1130 aa11.61□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 F11P03951 625 aa11.61□□□□□ -0.55
CSPG4P1Y-201ENST00000306641 TPM3P06753 285 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms