RNA–Protein interactions for RNA: ENST00000284767.9

PDLIM3-201, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 2,589 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-201ENST00000284767 LRMDAQ9H2I8 198 aa19.22■□□□□ 0.67
PDLIM3-201ENST00000284767 DNAJC17Q9NVM6 304 aaKnown RBP19.22■□□□□ 0.67
PDLIM3-201ENST00000284767 NEU2Q9Y3R4 380 aa19.22■□□□□ 0.67
PDLIM3-201ENST00000284767 POLR2BP30876 1174 aaKnown RBP19.22■□□□□ 0.67
PDLIM3-201ENST00000284767 HOXA11P31270 313 aaPredicted RBP19.22■□□□□ 0.67
PDLIM3-201ENST00000284767 CRHR2Q13324 411 aa19.22■□□□□ 0.67
PDLIM3-201ENST00000284767 MAMLD1Q13495 774 aa19.22■□□□□ 0.67
PDLIM3-201ENST00000284767 CCDC89Q8N998 374 aa19.22■□□□□ 0.67
PDLIM3-201ENST00000284767 DNAJB3Q8WWF6 145 aa19.22■□□□□ 0.67
PDLIM3-201ENST00000284767 USP6NLQ92738 828 aa19.22■□□□□ 0.67
PDLIM3-201ENST00000284767 EIF2AQ9BY44 585 aaKnown RBP19.22■□□□□ 0.67
PDLIM3-201ENST00000284767 UBN1Q9NPG3 1134 aa19.22■□□□□ 0.67
PDLIM3-201ENST00000284767 AVENQ9NQS1 362 aaPredicted RBP19.22■□□□□ 0.67
PDLIM3-201ENST00000284767 TBK1Q9UHD2 729 aa19.22■□□□□ 0.67
PDLIM3-201ENST00000284767 TRPM7Q96QT4 1865 aa19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 NPTXRO95502 500 aa19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 MYL3P08590 195 aa19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 CYP2C9P11712 490 aa19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 FOXN2P32314 431 aa19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 RPL7AP62424 266 aaKnown RBP19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 MFSD10Q14728 455 aa19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 TRIP13Q15645 432 aaPredicted RBP19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 ZNF667Q5HYK9 610 aa19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 AGGF1Q8N302 714 aaeCLIP19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 WDTC1Q8N5D0 677 aa19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 TMEM40Q8WWA1 233 aa19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 TJP2Q9UDY2 1190 aa19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 GJD2Q9UKL4 321 aa19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 TRIP11Q15643 1979 aa19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 TREHO43280 583 aa19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 GPR32O75388 356 aa19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 CD19P15391 556 aa19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 YARSP54577 528 aaKnown RBP19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 ARHGAP39Q9C0H5 1083 aa19.21■□□□□ 0.67
PDLIM3-201ENST00000284767 RASA4BC9J798 803 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 TNPO2O14787 897 aaKnown RBP19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 RASA4O43374 803 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 SMNDC1O75940 238 aaKnown RBP eCLIP19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 SLC18A1P54219 525 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 RGS9BPQ6ZS82 235 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 ZNF365Q70YC5 407 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 PHF13Q86YI8 300 aaPredicted RBP19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 MAML1Q92585 1016 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 ACAP3Q96P50 834 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 SNTG2Q9NY99 539 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 USH1CQ9Y6N9 552 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 ZNF236Q9UL36 1845 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 E7ENQ6 273 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 MYBL1P10243 752 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 TMEM132DQ14C87 1099 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 CCNG2Q16589 344 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 CYP4A22Q5TCH4 519 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 CATSPER4Q7RTX7 472 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 INPP5DQ92835 1189 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 TRIM11Q96F44 468 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 DDX27Q96GQ7 796 aaKnown RBP19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 TMEM237Q96Q45 408 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 HERPUD2Q9BSE4 406 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 MYLK2Q9H1R3 596 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 CORO1CQ9ULV4 474 aaPredicted RBP19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 USTQ9Y2C2 406 aa19.2■□□□□ 0.66
PDLIM3-201ENST00000284767 MYADML2A6NDP7 307 aa19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 PPP1R12AO14974 1030 aaPredicted RBP19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 ASMTLO95671 621 aa19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 MMP8P22894 467 aa19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 GJC1P36383 396 aa19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 WDR4P57081 412 aaKnown RBP19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 KLF1Q13351 362 aaPredicted RBP19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 BLMHQ13867 455 aa19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 GLRA4Q5JXX5 417 aa19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 DENND1BQ6P3S1 775 aa19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 TRIM72Q6ZMU5 477 aa19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 NRCAMQ92823 1304 aa19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 UTP4Q969X6 686 aaKnown RBP19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 SPDL1Q96EA4 605 aa19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 TLR3O15455 904 aaKnown RBP19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 TCF4P15884 667 aa19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 IRX1P78414 480 aaPredicted RBP19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 LIN9Q5TKA1 542 aa19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 IZUMO3Q5VZ72 239 aa19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 ZNF410Q86VK4 478 aa19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 VSIG1Q86XK7 387 aa19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 KIF12Q96FN5 646 aa19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 ZMAT2Q96NC0 199 aaKnown RBP19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 ADPGKQ9BRR6 497 aa19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 CYTH4Q9UIA0 394 aa19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 R3HDM2Q9Y2K5 976 aaKnown RBP19.19■□□□□ 0.66
PDLIM3-201ENST00000284767 CITO14578 2027 aa19.18■□□□□ 0.66
PDLIM3-201ENST00000284767 RRN3P2A6NIE6 340 aa19.18■□□□□ 0.66
PDLIM3-201ENST00000284767 PPEF2O14830 753 aa19.18■□□□□ 0.66
PDLIM3-201ENST00000284767 PRPF4O43172 522 aaKnown RBP eCLIP19.18■□□□□ 0.66
PDLIM3-201ENST00000284767 DCTN3O75935 186 aa19.18■□□□□ 0.66
PDLIM3-201ENST00000284767 SLC10A3P09131 477 aa19.18■□□□□ 0.66
PDLIM3-201ENST00000284767 PSEN2P49810 448 aa19.18■□□□□ 0.66
PDLIM3-201ENST00000284767 TAS2R40P59535 323 aa19.18■□□□□ 0.66
PDLIM3-201ENST00000284767 TMED2Q15363 201 aa19.18■□□□□ 0.66
PDLIM3-201ENST00000284767 CAPRIN2Q6IMN6 1127 aaKnown RBP19.18■□□□□ 0.66
PDLIM3-201ENST00000284767 PLEKHA7Q6IQ23 1121 aa19.18■□□□□ 0.66
PDLIM3-201ENST00000284767 FAM47EQ6ZV65 393 aa19.18■□□□□ 0.66
PDLIM3-201ENST00000284767 DPH6Q7L8W6 267 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms