RNA–Protein interactions for RNA: ENST00000249007.4

RFPL3-201, Transcript of ret finger protein like 3, humanhuman

TSL 1 (best) BASIC

Gene RFPL3, Length 1,488 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFPL3-201ENST00000249007 PNKPQ96T60 521 aa12.9□□□□□ -0.34
RFPL3-201ENST00000249007 HNRNPABQ99729 332 aaKnown RBP12.9□□□□□ -0.34
RFPL3-201ENST00000249007 CDC6Q99741 560 aa12.9□□□□□ -0.34
RFPL3-201ENST00000249007 KMT5AQ9NQR1 393 aa12.9□□□□□ -0.34
RFPL3-201ENST00000249007 DSEQ9UL01 958 aa12.9□□□□□ -0.34
RFPL3-201ENST00000249007 NOTCH2Q04721 2471 aa12.89□□□□□ -0.35
RFPL3-201ENST00000249007 CLDN3O15551 220 aa12.89□□□□□ -0.35
RFPL3-201ENST00000249007 CYP17A1P05093 508 aa12.89□□□□□ -0.35
RFPL3-201ENST00000249007 CLTAP09496 248 aa12.89□□□□□ -0.35
RFPL3-201ENST00000249007 HLA-EP13747 358 aa12.89□□□□□ -0.35
RFPL3-201ENST00000249007 PSMA5P28066 241 aa12.89□□□□□ -0.35
RFPL3-201ENST00000249007 GPR15P49685 360 aa12.89□□□□□ -0.35
RFPL3-201ENST00000249007 PPP2R3AQ06190 1150 aa12.89□□□□□ -0.35
RFPL3-201ENST00000249007 TOB2Q14106 344 aaPredicted RBP12.89□□□□□ -0.35
RFPL3-201ENST00000249007 SDHAF4Q5VUM1 108 aa12.89□□□□□ -0.35
RFPL3-201ENST00000249007 METTL23Q86XA0 190 aa12.89□□□□□ -0.35
RFPL3-201ENST00000249007 THEM5Q8N1Q8 247 aa12.89□□□□□ -0.35
RFPL3-201ENST00000249007 ARL14EPQ8N8R7 260 aaPredicted RBP12.89□□□□□ -0.35
RFPL3-201ENST00000249007 BAHD1Q8TBE0 780 aaPredicted RBP12.89□□□□□ -0.35
RFPL3-201ENST00000249007 ARHGEF4Q9NR80 690 aa12.89□□□□□ -0.35
RFPL3-201ENST00000249007 ARHGAP26Q9UNA1 814 aa12.89□□□□□ -0.35
RFPL3-201ENST00000249007 PCDHB5Q9Y5E4 795 aa12.89□□□□□ -0.35
RFPL3-201ENST00000249007 MYOFQ9NZM1 2061 aa12.89□□□□□ -0.35
RFPL3-201ENST00000249007 TEX51A0A1B0GUA7 166 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 WNT7AO00755 349 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 ZNF217O75362 1048 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 PRPF40AO75400 957 aaKnown RBP12.88□□□□□ -0.35
RFPL3-201ENST00000249007 CDKL5O76039 1030 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 TCF3P15923 654 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 PAX3P23760 479 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 KRT2P35908 639 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 EIF2S3P41091 472 aaKnown RBP12.88□□□□□ -0.35
RFPL3-201ENST00000249007 EIF2DP41214 584 aaKnown RBP12.88□□□□□ -0.35
RFPL3-201ENST00000249007 GRIA2P42262 883 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 SLC6A11P48066 632 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 KCNC4Q03721 635 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 STRN3Q13033 797 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 RESTQ13127 1097 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 DCP1BQ8IZD4 617 aaKnown RBP12.88□□□□□ -0.35
RFPL3-201ENST00000249007 RHBDD1Q8TEB9 315 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 TNFRSF25Q93038 417 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 ZNF274Q96GC6 653 aaPredicted RBP12.88□□□□□ -0.35
RFPL3-201ENST00000249007 TRMT2BQ96GJ1 504 aaKnown RBP12.88□□□□□ -0.35
RFPL3-201ENST00000249007 ZNF419Q96HQ0 510 aaPredicted RBP12.88□□□□□ -0.35
RFPL3-201ENST00000249007 PI4K2AQ9BTU6 479 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 TMEM60Q9H2L4 133 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 IL21RQ9HBE5 538 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 BRMS1Q9HCU9 246 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 TM7SF3Q9NS93 570 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 GCNT4Q9P109 453 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 CYP8B1Q9UNU6 501 aa12.88□□□□□ -0.35
RFPL3-201ENST00000249007 MUC22E2RYF6 1773 aaPredicted RBP12.88□□□□□ -0.35
RFPL3-201ENST00000249007 C2orf78A6NCI8 922 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 E9PAM4 449 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 RRP8O43159 456 aaKnown RBP12.87□□□□□ -0.35
RFPL3-201ENST00000249007 ZBTB24O43167 697 aaPredicted RBP12.87□□□□□ -0.35
RFPL3-201ENST00000249007 NDUFS2O75306 463 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 NOL4O94818 638 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 ZNF883P0CG24 379 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 HDCP19113 662 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 MAOBP27338 520 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 MATR3P43243 847 aaKnown RBP eCLIP12.87□□□□□ -0.35
RFPL3-201ENST00000249007 TNFRSF4P43489 277 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 KDSRQ06136 332 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 MCL1Q07820 350 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 SMAD1Q15797 465 aaKnown RBP12.87□□□□□ -0.35
RFPL3-201ENST00000249007 WDR45BQ5MNZ6 344 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 SPATA1Q5VX52 437 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 GPR155Q7Z3F1 870 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 TRMT11Q7Z4G4 463 aaKnown RBP12.87□□□□□ -0.35
RFPL3-201ENST00000249007 DAW1Q8N136 415 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 FSIP1Q8NA03 581 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 LRRC15Q8TF66 581 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 FOXJ1Q92949 421 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 NXPE2Q96DL1 559 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 MYRFLQ96LU7 910 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 LARP6Q9BRS8 491 aaKnown RBP12.87□□□□□ -0.35
RFPL3-201ENST00000249007 GAREM1Q9H706 876 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 FNDC3AQ9Y2H6 1198 aaKnown RBP12.87□□□□□ -0.35
RFPL3-201ENST00000249007 ANAPC1Q9H1A4 1944 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 SCN1AP35498 2009 aa12.87□□□□□ -0.35
RFPL3-201ENST00000249007 LRRK2Q5S007 2527 aa12.86□□□□□ -0.35
RFPL3-201ENST00000249007 A0A0A0MRY4 1105 aa12.86□□□□□ -0.35
RFPL3-201ENST00000249007 LACTBL1A8MY62 500 aa12.86□□□□□ -0.35
RFPL3-201ENST00000249007 CYB561D2O14569 222 aa12.86□□□□□ -0.35
RFPL3-201ENST00000249007 SLC16A4O15374 487 aa12.86□□□□□ -0.35
RFPL3-201ENST00000249007 FLRT2O43155 660 aa12.86□□□□□ -0.35
RFPL3-201ENST00000249007 HIP1RO75146 1068 aa12.86□□□□□ -0.35
RFPL3-201ENST00000249007 CILPO75339 1184 aa12.86□□□□□ -0.35
RFPL3-201ENST00000249007 CER1O95813 267 aa12.86□□□□□ -0.35
RFPL3-201ENST00000249007 HOXB2P14652 356 aa12.86□□□□□ -0.35
RFPL3-201ENST00000249007 TNFSF9P41273 254 aa12.86□□□□□ -0.35
RFPL3-201ENST00000249007 CCDC173Q0VFZ6 552 aa12.86□□□□□ -0.35
RFPL3-201ENST00000249007 DHCR24Q15392 516 aa12.86□□□□□ -0.35
RFPL3-201ENST00000249007 DDR2Q16832 855 aa12.86□□□□□ -0.35
RFPL3-201ENST00000249007 CCDC157Q569K6 752 aa12.86□□□□□ -0.35
RFPL3-201ENST00000249007 C9orf57Q5W0N0 161 aa12.86□□□□□ -0.35
RFPL3-201ENST00000249007 HAUS3Q68CZ6 603 aa12.86□□□□□ -0.35
RFPL3-201ENST00000249007 PCSK4Q6UW60 755 aa12.86□□□□□ -0.35
RFPL3-201ENST00000249007 ZPBP2Q6X784 338 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms