RNA–Protein interactions for RNA: YMR123W

PKR1, Transcript of V-ATPase assembly factor, yeast

Gene PKR1, Length 369 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PKR1	YMR123W	SGF11	Q03067	99 aa		0.9	□□□□□ -2.27
PKR1	YMR123W	YLR031W	Q07978	186 aa		0.9	□□□□□ -2.27
PKR1	YMR123W	HRD1	Q08109	551 aa		0.9	□□□□□ -2.27
PKR1	YMR123W	ATG41	Q12048	136 aa		0.9	□□□□□ -2.27
PKR1	YMR123W	YLR365W	Q7LIF2	110 aa		0.9	□□□□□ -2.27
PKR1	YMR123W	MED11	Q99278	115 aa		0.9	□□□□□ -2.27
PKR1	YMR123W	YJL197C-A	P0C5P0	93 aa		0.89	□□□□□ -2.27
PKR1	YMR123W	MAG1	P22134	296 aa	Known RBP	0.89	□□□□□ -2.27
PKR1	YMR123W	SPO13	P23624	291 aa		0.89	□□□□□ -2.27
PKR1	YMR123W	TRR1	P29509	319 aa	Known RBP	0.89	□□□□□ -2.27
PKR1	YMR123W	YBL071C	P38185	102 aa		0.89	□□□□□ -2.27
PKR1	YMR123W	HTD2	P38790	280 aa	Known RBP	0.89	□□□□□ -2.27
PKR1	YMR123W	SNF11	P38956	169 aa		0.89	□□□□□ -2.27
PKR1	YMR123W	YNL200C	P40165	246 aa	Known RBP	0.89	□□□□□ -2.27
PKR1	YMR123W	YJR015W	P47090	510 aa		0.89	□□□□□ -2.27
PKR1	YMR123W	ARP3	P47117	449 aa	Known RBP	0.89	□□□□□ -2.27
PKR1	YMR123W	YAE1	P47118	141 aa	Predicted RBP	0.89	□□□□□ -2.27
PKR1	YMR123W	VMA10	P48836	114 aa	Known RBP	0.89	□□□□□ -2.27
PKR1	YMR123W	YGR025W	P53216	100 aa		0.89	□□□□□ -2.27
PKR1	YMR123W	YIP3	P53633	176 aa		0.89	□□□□□ -2.27
PKR1	YMR123W	DYN2	Q02647	92 aa		0.89	□□□□□ -2.27
PKR1	YMR123W	LCL2	Q08045	131 aa		0.89	□□□□□ -2.27
PKR1	YMR123W	RAD28	Q12021	506 aa		0.89	□□□□□ -2.27
PKR1	YMR123W	YGL258W-A	Q3E740	77 aa		0.89	□□□□□ -2.27
PKR1	YMR123W	PET20	Q99373	253 aa		0.89	□□□□□ -2.27
PKR1	YMR123W	POR1	P04840	283 aa	Known RBP	0.88	□□□□□ -2.27
PKR1	YMR123W	MRS1	P07266	363 aa		0.88	□□□□□ -2.27
PKR1	YMR123W	AQY2	P0CD90	149 aa		0.88	□□□□□ -2.27
PKR1	YMR123W	RPS11A	P0CX47	156 aa	Known RBP	0.88	□□□□□ -2.27
PKR1	YMR123W	RPS11B	P0CX48	156 aa	Known RBP	0.88	□□□□□ -2.27
PKR1	YMR123W	PAN3	P36102	679 aa	Predicted RBP	0.88	□□□□□ -2.27
PKR1	YMR123W	NSA2	P40078	261 aa	Known RBP	0.88	□□□□□ -2.27
PKR1	YMR123W	GIM3	P53900	129 aa		0.88	□□□□□ -2.27
PKR1	YMR123W	EST3	Q03096	181 aa		0.88	□□□□□ -2.27
PKR1	YMR123W	THI74	Q04083	370 aa		0.88	□□□□□ -2.27
PKR1	YMR123W	FRQ1	Q06389	190 aa		0.88	□□□□□ -2.27
PKR1	YMR123W	VAM10	Q08474	114 aa		0.88	□□□□□ -2.27
PKR1	YMR123W	SCP1	Q08873	200 aa		0.88	□□□□□ -2.27
PKR1	YMR123W	POC4	Q12245	148 aa	Predicted RBP	0.88	□□□□□ -2.27
PKR1	YMR123W	SUS1	Q6WNK7	96 aa		0.88	□□□□□ -2.27
PKR1	YMR123W	YHR213W	P0CI67	198 aa		0.87	□□□□□ -2.27
PKR1	YMR123W	SEC11	P15367	167 aa		0.87	□□□□□ -2.27
PKR1	YMR123W	CNB1	P25296	175 aa		0.87	□□□□□ -2.27
PKR1	YMR123W	MRP17	P28778	131 aa		0.87	□□□□□ -2.27
PKR1	YMR123W	GPI2	P46961	280 aa		0.87	□□□□□ -2.27
PKR1	YMR123W	IMP2	P46972	177 aa		0.87	□□□□□ -2.27
PKR1	YMR123W	RBL2	P48606	106 aa	Known RBP	0.87	□□□□□ -2.27
PKR1	YMR123W	MMS2	P53152	137 aa		0.87	□□□□□ -2.27
PKR1	YMR123W	TOM7	P53507	60 aa		0.87	□□□□□ -2.27
PKR1	YMR123W	VPS28	Q02767	242 aa		0.87	□□□□□ -2.27
PKR1	YMR123W	SDH7	Q04401	133 aa		0.87	□□□□□ -2.27
PKR1	YMR123W	COA4	Q05809	96 aa		0.87	□□□□□ -2.27
PKR1	YMR123W	KEI1	Q06346	221 aa		0.87	□□□□□ -2.27
PKR1	YMR123W	SYM1	Q06563	197 aa		0.87	□□□□□ -2.27
PKR1	YMR123W	YNL146C-A	Q3E7Z1	64 aa		0.87	□□□□□ -2.27
PKR1	YMR123W	YCR075W-A	Q3E830	75 aa		0.87	□□□□□ -2.27
PKR1	YMR123W	MBF1	O14467	151 aa	Known RBP	0.86	□□□□□ -2.27
PKR1	YMR123W	QCR2	P07257	368 aa		0.86	□□□□□ -2.27
PKR1	YMR123W	CKS1	P20486	150 aa	Known RBP	0.86	□□□□□ -2.27
PKR1	YMR123W	SHB17	P36136	271 aa	Known RBP	0.86	□□□□□ -2.27
PKR1	YMR123W	SFT2	P38166	215 aa		0.86	□□□□□ -2.27
PKR1	YMR123W	YBR209W	P38311	105 aa		0.86	□□□□□ -2.27
PKR1	YMR123W	HPA3	P39979	161 aa		0.86	□□□□□ -2.27
PKR1	YMR123W	YEA4	P40004	342 aa		0.86	□□□□□ -2.27
PKR1	YMR123W	LSM1	P47017	172 aa	Known RBP	0.86	□□□□□ -2.27
PKR1	YMR123W	YJR111C	P47148	283 aa	Known RBP	0.86	□□□□□ -2.27
PKR1	YMR123W	MRPS17	Q03246	237 aa	Predicted RBP	0.86	□□□□□ -2.27
PKR1	YMR123W	YOR385W	Q08909	290 aa		0.86	□□□□□ -2.27
PKR1	YMR123W	RPS25B	P0C0T4	108 aa	Known RBP	0.85	□□□□□ -2.27
PKR1	YMR123W	LSM2	P38203	95 aa	Known RBP	0.85	□□□□□ -2.27
PKR1	YMR123W	YPL073C	P40323	161 aa		0.85	□□□□□ -2.27
PKR1	YMR123W	SPC1	P46965	94 aa		0.85	□□□□□ -2.27
PKR1	YMR123W	UBC12	P52491	188 aa		0.85	□□□□□ -2.27
PKR1	YMR123W	YNL184C	P53876	108 aa		0.85	□□□□□ -2.27
PKR1	YMR123W	SNO1	Q03144	224 aa		0.85	□□□□□ -2.27
PKR1	YMR123W	YMR090W	Q04304	227 aa	Known RBP	0.85	□□□□□ -2.27
PKR1	YMR123W	NAT3	Q06504	195 aa		0.85	□□□□□ -2.27
PKR1	YMR123W	YOL014W	Q08110	124 aa		0.85	□□□□□ -2.27
PKR1	YMR123W	DGA1	Q08650	418 aa		0.85	□□□□□ -2.27
PKR1	YMR123W	RPS25A	Q3E792	108 aa	Predicted RBP	0.85	□□□□□ -2.27
PKR1	YMR123W	RTC6	O14464	93 aa		0.84	□□□□□ -2.27
PKR1	YMR123W	YDR034C-A	P0C289	58 aa		0.84	□□□□□ -2.27
PKR1	YMR123W	FPR2	P32472	135 aa		0.84	□□□□□ -2.27
PKR1	YMR123W	EMP24	P32803	203 aa	Known RBP	0.84	□□□□□ -2.27
PKR1	YMR123W	CSH1	P38287	376 aa		0.84	□□□□□ -2.27
PKR1	YMR123W	EMC5	P40540	141 aa		0.84	□□□□□ -2.27
PKR1	YMR123W	SER2	P42941	309 aa		0.84	□□□□□ -2.27
PKR1	YMR123W	SKI6	P46948	246 aa	Predicted RBP	0.84	□□□□□ -2.27
PKR1	YMR123W	MIC27	P50945	234 aa		0.84	□□□□□ -2.27
PKR1	YMR123W	YGR017W	P53210	297 aa		0.84	□□□□□ -2.27
PKR1	YMR123W	ORM1	P53224	222 aa		0.84	□□□□□ -2.27
PKR1	YMR123W	TMA20	P89886	181 aa	Predicted RBP	0.84	□□□□□ -2.27
PKR1	YMR123W	TMA23	Q03525	211 aa		0.84	□□□□□ -2.27
PKR1	YMR123W	YMR007W	Q03675	126 aa		0.84	□□□□□ -2.27
PKR1	YMR123W	CUE4	Q04201	117 aa	Predicted RBP	0.84	□□□□□ -2.27
PKR1	YMR123W	SHH3	Q04487	196 aa		0.84	□□□□□ -2.27
PKR1	YMR123W	CCW12	Q12127	133 aa		0.84	□□□□□ -2.27
PKR1	YMR123W	RDI1	Q12434	202 aa		0.84	□□□□□ -2.27
PKR1	YMR123W	YPR145C-A	Q2V2P0	78 aa		0.84	□□□□□ -2.27
PKR1	YMR123W	YGR240C-A	Q3E786	66 aa		0.84	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 57.5 ms