RNA–Protein interactions for RNA: YKL125W

RRN3, Transcript of Protein required for transcription of rDNA by RNA polymerase I, yeast

Gene RRN3, Length 1,884 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRN3	YKL125W	LST8	P41318	303 aa		4.31	□□□□□ -1.72
RRN3	YKL125W	DSE2	P38844	325 aa		4.3	□□□□□ -1.72
RRN3	YKL125W	MBB1	P39534	108 aa		4.3	□□□□□ -1.72
RRN3	YKL125W	PEX22	P39718	180 aa		4.3	□□□□□ -1.72
RRN3	YKL125W	YPI1	P43587	155 aa		4.3	□□□□□ -1.72
RRN3	YKL125W	LSM6	Q06406	86 aa	Known RBP	4.3	□□□□□ -1.72
RRN3	YKL125W	HUG1	Q6Q5K6	68 aa		4.3	□□□□□ -1.72
RRN3	YKL125W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	4.3	□□□□□ -1.72	not detected
RRN3	YKL125W	YNR077C	P53758	84 aa		4.3	□□□□□ -1.72
RRN3	YKL125W	YLR302C	O13544	120 aa		4.29	□□□□□ -1.72
RRN3	YKL125W	MRPL31	P14063	131 aa	Predicted RBP	4.29	□□□□□ -1.72
RRN3	YKL125W	RRT13	P40042	185 aa		4.29	□□□□□ -1.72
RRN3	YKL125W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.29	□□□□□ -1.72	not detected
RRN3	YKL125W	YLR365W	Q7LIF2	110 aa		4.29	□□□□□ -1.72
RRN3	YKL125W	RPL28	P02406	149 aa	Known RBP	4.28	□□□□□ -1.72
RRN3	YKL125W	ROX3	P25046	220 aa		4.28	□□□□□ -1.72
RRN3	YKL125W	API2	Q04413	109 aa		4.28	□□□□□ -1.72
RRN3	YKL125W	RLM1	Q12224	676 aa		4.28	□□□□□ -1.72
RRN3	YKL125W	HTL1	Q9URQ5	78 aa		4.28	□□□□□ -1.72
RRN3	YKL125W	GGC1	P38988	300 aa		4.28	□□□□□ -1.72
RRN3	YKL125W	HUA1	P40325	198 aa		4.28	□□□□□ -1.72
RRN3	YKL125W	YPR064W	Q12492	139 aa		4.28	□□□□□ -1.72
RRN3	YKL125W	YPR108W-A	Q3E7B3	70 aa		4.28	□□□□□ -1.72
RRN3	YKL125W	YDL022C-A	P0C5L6	82 aa		4.27	□□□□□ -1.73
RRN3	YKL125W	UBC4	P15731	148 aa		4.27	□□□□□ -1.73
RRN3	YKL125W	BET1	P22804	142 aa		4.27	□□□□□ -1.73
RRN3	YKL125W	PET8	P38921	284 aa		4.27	□□□□□ -1.73
RRN3	YKL125W	VEL1	P53058	206 aa		4.27	□□□□□ -1.73
RRN3	YKL125W	PET191	Q02772	108 aa		4.27	□□□□□ -1.73
RRN3	YKL125W	SHH4	Q06236	168 aa		4.27	□□□□□ -1.73
RRN3	YKL125W	YDR381C-A	Q3E6R5	114 aa		4.27	□□□□□ -1.73
RRN3	YKL125W	RRT15	Q3E811	62 aa		4.27	□□□□□ -1.73
RRN3	YKL125W	RPL42A	P0CX27	106 aa	Known RBP	4.26	□□□□□ -1.73
RRN3	YKL125W	RPL42B	P0CX28	106 aa	Known RBP	4.26	□□□□□ -1.73
RRN3	YKL125W	FPR2	P32472	135 aa		4.26	□□□□□ -1.73
RRN3	YKL125W	PCL5	P38794	229 aa		4.26	□□□□□ -1.73
RRN3	YKL125W	YHR180W	P38868	163 aa		4.26	□□□□□ -1.73
RRN3	YKL125W	ATP19	P81451	68 aa		4.26	□□□□□ -1.73
RRN3	YKL125W	IRC23	Q08416	157 aa		4.26	□□□□□ -1.73
RRN3	YKL125W	YPL261C	Q08976	102 aa		4.26	□□□□□ -1.73
RRN3	YKL125W	AQY1	P0CD91	305 aa		4.26	□□□□□ -1.73
RRN3	YKL125W	SWD3	P38123	315 aa		4.26	□□□□□ -1.73
RRN3	YKL125W	YNL208W	P40159	199 aa	Known RBP	4.26	□□□□□ -1.73
RRN3	YKL125W	YFL051C	P43552	160 aa		4.26	□□□□□ -1.73
RRN3	YKL125W	SWS2	P53937	143 aa		4.26	□□□□□ -1.73
RRN3	YKL125W	HAL1	Q01766	294 aa		4.26	□□□□□ -1.73
RRN3	YKL125W	YDR209C	Q03480	137 aa		4.26	□□□□□ -1.73
RRN3	YKL125W	MIX14	Q04341	121 aa		4.26	□□□□□ -1.73
RRN3	YKL125W	RPS8A	P0CX39	200 aa	Known RBP	4.25	□□□□□ -1.73
RRN3	YKL125W	RPS8B	P0CX40	200 aa	Known RBP	4.25	□□□□□ -1.73
RRN3	YKL125W	RPL18A	P0CX49	186 aa	Known RBP	4.25	□□□□□ -1.73
RRN3	YKL125W	RPL18B	P0CX50	186 aa	Known RBP	4.25	□□□□□ -1.73
RRN3	YKL125W	YBL081W	P38180	368 aa	Known RBP	4.25	□□□□□ -1.73
RRN3	YKL125W	YER187W	P40102	141 aa		4.25	□□□□□ -1.73
RRN3	YKL125W	YGR050C	P53231	118 aa		4.25	□□□□□ -1.73
RRN3	YKL125W	YBR126W-A	Q8TGU7	68 aa		4.25	□□□□□ -1.73
RRN3	YKL125W	YIA6	P40556	373 aa		4.24	□□□□□ -1.73
RRN3	YKL125W	YFL019C	P43576	117 aa		4.24	□□□□□ -1.73
RRN3	YKL125W	RRS1	Q08746	203 aa	Known RBP	4.24	□□□□□ -1.73
RRN3	YKL125W	VTC1	P40046	129 aa	RIP-Chip data	4.24	□□□□□ -1.73	not detected
RRN3	YKL125W	SIM1	P40472	476 aa		4.24	□□□□□ -1.73
RRN3	YKL125W	GAT4	P40569	121 aa		4.24	□□□□□ -1.73
RRN3	YKL125W	YFR054C	P43622	192 aa		4.24	□□□□□ -1.73
RRN3	YKL125W	YNL046W	P53956	172 aa		4.24	□□□□□ -1.73
RRN3	YKL125W	NIP7	Q08962	181 aa	Known RBP	4.24	□□□□□ -1.73
RRN3	YKL125W	YLR112W	Q12130	139 aa		4.24	□□□□□ -1.73
RRN3	YKL125W	MIC10	Q96VH5	97 aa		4.24	□□□□□ -1.73
RRN3	YKL125W	IGO2	Q9P305	131 aa		4.24	□□□□□ -1.73
RRN3	YKL125W	DSS4	P32601	143 aa		4.23	□□□□□ -1.73
RRN3	YKL125W	YHR173C	P38864	112 aa		4.23	□□□□□ -1.73
RRN3	YKL125W	YMR321C	Q04898	105 aa		4.23	□□□□□ -1.73
RRN3	YKL125W	EMC6	Q12431	108 aa		4.23	□□□□□ -1.73
RRN3	YKL125W	TDA8	Q6B2U8	126 aa		4.23	□□□□□ -1.73
RRN3	YKL125W	RPL16B	P26785	198 aa	Known RBP	4.22	□□□□□ -1.73
RRN3	YKL125W	NRM1	P53718	249 aa		4.22	□□□□□ -1.73
RRN3	YKL125W	YOL029C	Q08187	201 aa		4.22	□□□□□ -1.73
RRN3	YKL125W	PIR1	Q03178	341 aa		4.22	□□□□□ -1.73
RRN3	YKL125W	YDR102C	Q03864	110 aa		4.22	□□□□□ -1.73
RRN3	YKL125W	YLR012C	Q07927	99 aa		4.22	□□□□□ -1.73
RRN3	YKL125W	YOL118C	Q08259	102 aa		4.22	□□□□□ -1.73
RRN3	YKL125W	YOR387C	Q08910	206 aa		4.22	□□□□□ -1.73
RRN3	YKL125W	YDR246W-A	Q3E763	66 aa		4.22	□□□□□ -1.73
RRN3	YKL125W	PFY1	P07274	126 aa		4.21	□□□□□ -1.74
RRN3	YKL125W	YKR032W	P36127	104 aa		4.21	□□□□□ -1.74
RRN3	YKL125W	YSY6	P38374	65 aa		4.21	□□□□□ -1.74
RRN3	YKL125W	PIR5	P46999	287 aa		4.21	□□□□□ -1.74
RRN3	YKL125W	SPO24	Q3E752	67 aa		4.21	□□□□□ -1.74
RRN3	YKL125W	PAU7	P39545	55 aa		4.2	□□□□□ -1.74
RRN3	YKL125W	TOM7	P53507	60 aa		4.2	□□□□□ -1.74
RRN3	YKL125W	RSM19	P53733	91 aa	Predicted RBP	4.2	□□□□□ -1.74
RRN3	YKL125W	TIM22	Q12328	207 aa		4.2	□□□□□ -1.74
RRN3	YKL125W	RPS14A	P06367	137 aa	Known RBP	4.2	□□□□□ -1.74
RRN3	YKL125W	RPL30	P14120	105 aa	Known RBP	4.2	□□□□□ -1.74
RRN3	YKL125W	YNL217W	P40152	326 aa		4.2	□□□□□ -1.74
RRN3	YKL125W	OST1	P41543	476 aa	Known RBP	4.2	□□□□□ -1.74
RRN3	YKL125W	SMD1	Q02260	146 aa	Predicted RBP	4.2	□□□□□ -1.74
RRN3	YKL125W	YOR268C	Q08734	132 aa		4.2	□□□□□ -1.74
RRN3	YKL125W	YOR192C-C	Q3E736	78 aa		4.2	□□□□□ -1.74
RRN3	YKL125W	YHR213W	P0CI67	198 aa		4.19	□□□□□ -1.74
RRN3	YKL125W	RPL20A	P0CX23	172 aa	Known RBP	4.19	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 105.3 ms