RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C YLR296WQ05898 108 aa3.94□□□□□ -1.78
DEF1YKL054C EMC6Q12431 108 aa3.94□□□□□ -1.78
DEF1YKL054C HUR1P45820 110 aa3.93□□□□□ -1.78
DEF1YKL054C LTE1P07866 1435 aa3.93□□□□□ -1.78
DEF1YKL054C RPL13BP40212 199 aaKnown RBP3.93□□□□□ -1.78
DEF1YKL054C PAU19P0CE85 124 aa3.92□□□□□ -1.78
DEF1YKL054C PAU3P25610 124 aa3.92□□□□□ -1.78
DEF1YKL054C PCC1Q3E833 88 aa3.92□□□□□ -1.78
DEF1YKL054C LAA1P39526 2014 aa3.92□□□□□ -1.78
DEF1YKL054C TY3B-IQ7LHG5 1498 aaKnown RBP3.91□□□□□ -1.78
DEF1YKL054C ATG8P38182 117 aaRIP-Chip data3.91□□□□□ -1.78not detected
DEF1YKL054C SML1Q04964 104 aa3.91□□□□□ -1.78
DEF1YKL054C YLR194CQ05777 254 aa3.91□□□□□ -1.78
DEF1YKL054C OST5Q92316 86 aa3.91□□□□□ -1.78
DEF1YKL054C RPB7P34087 171 aa3.9□□□□□ -1.78
DEF1YKL054C MET5P47169 1442 aa3.9□□□□□ -1.78
DEF1YKL054C ESC1Q03661 1658 aaKnown RBP3.9□□□□□ -1.79
DEF1YKL054C PDR10P51533 1564 aa3.9□□□□□ -1.79
DEF1YKL054C YMR082CQ04276 118 aa3.9□□□□□ -1.79
DEF1YKL054C SNN1P48232 102 aa3.89□□□□□ -1.79
DEF1YKL054C YSP2Q06681 1438 aa3.88□□□□□ -1.79
DEF1YKL054C ECM12O13529 151 aa3.88□□□□□ -1.79
DEF1YKL054C VMA21P41806 77 aa3.87□□□□□ -1.79
DEF1YKL054C MHF1Q3E835 90 aa3.87□□□□□ -1.79
DEF1YKL054C TY1B-PR2P0C2J0 1756 aa3.87□□□□□ -1.79
DEF1YKL054C COX23P38824 151 aa3.87□□□□□ -1.79
DEF1YKL054C MIX14Q04341 121 aa3.86□□□□□ -1.79
DEF1YKL054C YIR020CP40575 100 aa3.86□□□□□ -1.79
DEF1YKL054C PAU16P35994 123 aa3.85□□□□□ -1.79
DEF1YKL054C DSE2P38844 325 aa3.85□□□□□ -1.79
DEF1YKL054C PAU15P40585 124 aa3.85□□□□□ -1.79
DEF1YKL054C RPL36BO14455 100 aaKnown RBP3.85□□□□□ -1.79
DEF1YKL054C RPL36AP05745 100 aaPredicted RBP3.85□□□□□ -1.79
DEF1YKL054C SRB6P32570 121 aa3.85□□□□□ -1.79
DEF1YKL054C RPL22BP56628 122 aaKnown RBP3.85□□□□□ -1.79
DEF1YKL054C HPA2Q06592 156 aa3.84□□□□□ -1.79
DEF1YKL054C QCR8P08525 94 aa3.83□□□□□ -1.8
DEF1YKL054C MET31Q03081 177 aa3.83□□□□□ -1.8
DEF1YKL054C YHR007C-AQ07074 71 aa3.83□□□□□ -1.8
DEF1YKL054C MYO1P08964 1928 aa3.83□□□□□ -1.8
DEF1YKL054C CWP2P43497 92 aa3.83□□□□□ -1.8
DEF1YKL054C DAN1P47178 298 aa3.83□□□□□ -1.8
DEF1YKL054C SRX1P36077 127 aa3.82□□□□□ -1.8
DEF1YKL054C GSC2P40989 1895 aa3.82□□□□□ -1.8
DEF1YKL054C TAR1Q8TGM6 124 aa3.82□□□□□ -1.8
DEF1YKL054C FMT1P32785 401 aa3.81□□□□□ -1.8
DEF1YKL054C HMRA2P0CY13 119 aa3.8□□□□□ -1.8
DEF1YKL054C CYB5P40312 120 aa3.8□□□□□ -1.8
DEF1YKL054C PAU5P43575 122 aa3.8□□□□□ -1.8
DEF1YKL054C YDR042CQ03205 200 aa3.8□□□□□ -1.8
DEF1YKL054C YHR138CP38841 114 aaPredicted RBP3.79□□□□□ -1.8
DEF1YKL054C YEL008WP40001 126 aa3.79□□□□□ -1.8
DEF1YKL054C YJL197C-AP0C5P0 93 aa3.79□□□□□ -1.8
DEF1YKL054C ACC1Q00955 2233 aaKnown RBP3.78□□□□□ -1.8
DEF1YKL054C YGL014C-AP0C5N1 53 aa3.78□□□□□ -1.8
DEF1YKL054C RGM1Q00453 211 aa3.78□□□□□ -1.8
DEF1YKL054C SUS1Q6WNK7 96 aa3.78□□□□□ -1.8
DEF1YKL054C YHR213WP0CI67 198 aa3.77□□□□□ -1.81
DEF1YKL054C YLR285C-AQ3E771 56 aa3.77□□□□□ -1.81
DEF1YKL054C AIM4P38305 123 aaPredicted RBP3.76□□□□□ -1.81
DEF1YKL054C GCV3P39726 170 aaPredicted RBP3.76□□□□□ -1.81
DEF1YKL054C YLR363W-AQ3E747 85 aa3.76□□□□□ -1.81
DEF1YKL054C FAB1P34756 2278 aa3.75□□□□□ -1.81
DEF1YKL054C RPS22AP0C0W1 130 aaKnown RBP3.75□□□□□ -1.81
DEF1YKL054C LSM2P38203 95 aaKnown RBP3.75□□□□□ -1.81
DEF1YKL054C RPA190P10964 1664 aaKnown RBP3.74□□□□□ -1.81
DEF1YKL054C NRG2P38082 220 aa3.74□□□□□ -1.81
DEF1YKL054C YBR027CP38220 110 aa3.74□□□□□ -1.81
DEF1YKL054C YDL012CQ12489 107 aa3.74□□□□□ -1.81
DEF1YKL054C FLO9P39712 1322 aa3.73□□□□□ -1.81
DEF1YKL054C MIX17Q03667 156 aa3.72□□□□□ -1.81
DEF1YKL054C CYR1P08678 2026 aaKnown RBP3.72□□□□□ -1.81
DEF1YKL054C TY1B-BRQ12193 1756 aa3.72□□□□□ -1.81
DEF1YKL054C LST8P41318 303 aa3.71□□□□□ -1.82
DEF1YKL054C ICY1Q04329 127 aa3.71□□□□□ -1.82
DEF1YKL054C POR2P40478 281 aa3.7□□□□□ -1.82
DEF1YKL054C YFL065CP43539 102 aa3.7□□□□□ -1.82
DEF1YKL054C YLR162WQ06235 118 aa3.7□□□□□ -1.82
DEF1YKL054C PRM3Q08931 133 aa3.7□□□□□ -1.82
DEF1YKL054C YPR203WQ08994 102 aa3.7□□□□□ -1.82
DEF1YKL054C RPL33AP05744 107 aaKnown RBP3.7□□□□□ -1.82
DEF1YKL054C RSM18P40033 138 aa3.7□□□□□ -1.82
DEF1YKL054C ROX3P25046 220 aa3.69□□□□□ -1.82
DEF1YKL054C POC4Q12245 148 aaPredicted RBP3.69□□□□□ -1.82
DEF1YKL054C ROM2P51862 1356 aaKnown RBP3.69□□□□□ -1.82
DEF1YKL054C YCR085WP25650 117 aa3.68□□□□□ -1.82
DEF1YKL054C SED1Q01589 338 aa3.68□□□□□ -1.82
DEF1YKL054C YMR122CQ03879 124 aa3.68□□□□□ -1.82
DEF1YKL054C RPS22BQ3E7Y3 130 aaKnown RBP3.68□□□□□ -1.82
DEF1YKL054C DNA2P38859 1522 aa3.67□□□□□ -1.82
DEF1YKL054C IMP2P46972 177 aa3.67□□□□□ -1.82
DEF1YKL054C VAM10Q08474 114 aa3.67□□□□□ -1.82
DEF1YKL054C ENV10Q99382 181 aa3.67□□□□□ -1.82
DEF1YKL054C YLR419WQ06698 1435 aaKnown RBP3.67□□□□□ -1.82
DEF1YKL054C YMR175W-AQ3E766 64 aa3.67□□□□□ -1.82
DEF1YKL054C YPR096CO13587 100 aa3.66□□□□□ -1.82
DEF1YKL054C RPL22AP05749 121 aaKnown RBP3.66□□□□□ -1.82
DEF1YKL054C YIL163CP40448 117 aa3.66□□□□□ -1.82
DEF1YKL054C LSM6Q06406 86 aaKnown RBP3.66□□□□□ -1.82
DEF1YKL054C COA3Q3E7B2 85 aa3.66□□□□□ -1.82
Retrieved 100 of 5,963 RNA–protein pairs in 56.1 ms