RNA–Protein interactions for RNA: YDR301W

CFT1, Transcript of RNA-binding subunit of the mRNA cleavage and polyadenylation factor, yeast

Gene CFT1, Length 4,074 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CFT1	YDR301W	RDS3	Q06835	107 aa	Predicted RBP	1.28	□□□□□ -2.2
CFT1	YDR301W	POM33	Q12164	279 aa		1.28	□□□□□ -2.2
CFT1	YDR301W	RPL27A	P0C2H6	136 aa	Known RBP	1.28	□□□□□ -2.21
CFT1	YDR301W	RPS8A	P0CX39	200 aa	Known RBP	1.28	□□□□□ -2.21
CFT1	YDR301W	RPS8B	P0CX40	200 aa	Known RBP	1.28	□□□□□ -2.21
CFT1	YDR301W	MDM10	P18409	493 aa		1.28	□□□□□ -2.21
CFT1	YDR301W	IRC22	P40006	225 aa		1.28	□□□□□ -2.21
CFT1	YDR301W	YFR045W	P43617	309 aa		1.28	□□□□□ -2.21
CFT1	YDR301W	VAM10	Q08474	114 aa		1.28	□□□□□ -2.21
CFT1	YDR301W	CRC1	Q12289	327 aa		1.28	□□□□□ -2.21
CFT1	YDR301W	SMT3	Q12306	101 aa	Known RBP	1.28	□□□□□ -2.21
CFT1	YDR301W	YGR240C-A	Q3E786	66 aa		1.28	□□□□□ -2.21
CFT1	YDR301W	RPL27B	P0C2H7	136 aa	Known RBP	1.27	□□□□□ -2.21
CFT1	YDR301W	RPS2	P25443	254 aa	Known RBP	1.27	□□□□□ -2.21
CFT1	YDR301W	AGE2	P40529	298 aa		1.27	□□□□□ -2.21
CFT1	YDR301W	TOM7	P53507	60 aa		1.27	□□□□□ -2.21
CFT1	YDR301W	COX12	Q01519	83 aa		1.27	□□□□□ -2.21
CFT1	YDR301W	GRH1	Q04410	372 aa	Known RBP	1.27	□□□□□ -2.21
CFT1	YDR301W	MHR1	Q06630	226 aa		1.27	□□□□□ -2.21
CFT1	YDR301W	AUA1	P32450	94 aa		1.27	□□□□□ -2.21
CFT1	YDR301W	YBR013C	P38215	129 aa		1.27	□□□□□ -2.21
CFT1	YDR301W	YFR035C	P43608	114 aa		1.27	□□□□□ -2.21
CFT1	YDR301W	ATP23	P53722	227 aa		1.27	□□□□□ -2.21
CFT1	YDR301W	DAD3	P69850	94 aa		1.27	□□□□□ -2.21
CFT1	YDR301W	COA6	Q3E846	104 aa		1.27	□□□□□ -2.21
CFT1	YDR301W	RPL16A	P26784	199 aa	Known RBP	1.27	□□□□□ -2.21
CFT1	YDR301W	MIG1	P27705	504 aa		1.27	□□□□□ -2.21
CFT1	YDR301W	AGA1	P32323	725 aa		1.27	□□□□□ -2.21
CFT1	YDR301W	ZRT1	P32804	376 aa		1.27	□□□□□ -2.21
CFT1	YDR301W	FZF1	P32805	299 aa		1.27	□□□□□ -2.21
CFT1	YDR301W	DAD1	Q12248	94 aa		1.27	□□□□□ -2.21
CFT1	YDR301W	TIM22	Q12328	207 aa		1.27	□□□□□ -2.21
CFT1	YDR301W	YBR200W-A	Q3E755	54 aa		1.27	□□□□□ -2.21
CFT1	YDR301W	YCL001W-B	Q96VH2	84 aa		1.27	□□□□□ -2.21
CFT1	YDR301W	PFY1	P07274	126 aa		1.26	□□□□□ -2.21
CFT1	YDR301W	MIG3	P39943	394 aa		1.26	□□□□□ -2.21
CFT1	YDR301W	DAD4	P69851	72 aa		1.26	□□□□□ -2.21
CFT1	YDR301W	SCW10	Q04951	389 aa		1.26	□□□□□ -2.21
CFT1	YDR301W	FCF1	Q05498	189 aa	Predicted RBP	1.26	□□□□□ -2.21
CFT1	YDR301W	HHF1	P02309	103 aa	Known RBP	1.26	□□□□□ -2.21
CFT1	YDR301W	KTI12	P34253	313 aa	Known RBP	1.26	□□□□□ -2.21
CFT1	YDR301W	ECM33	P38248	429 aa	Known RBP	1.26	□□□□□ -2.21
CFT1	YDR301W	FYV4	P38783	130 aa	Predicted RBP	1.26	□□□□□ -2.21
CFT1	YDR301W	YHR140W	P38842	239 aa		1.26	□□□□□ -2.21
CFT1	YDR301W	YIL163C	P40448	117 aa		1.26	□□□□□ -2.21
CFT1	YDR301W	HAC1	P41546	238 aa		1.26	□□□□□ -2.21
CFT1	YDR301W	TOS6	P48560	102 aa		1.26	□□□□□ -2.21
CFT1	YDR301W	YNL162W-A	Q3E7A8	72 aa		1.26	□□□□□ -2.21
CFT1	YDR301W	RPL42A	P0CX27	106 aa	Known RBP	1.26	□□□□□ -2.21
CFT1	YDR301W	RPL42B	P0CX28	106 aa	Known RBP	1.26	□□□□□ -2.21
CFT1	YDR301W	UBC5	P15732	148 aa		1.26	□□□□□ -2.21
CFT1	YDR301W	YCR023C	P25351	611 aa		1.26	□□□□□ -2.21
CFT1	YDR301W	RPL16B	P26785	198 aa	Known RBP	1.26	□□□□□ -2.21
CFT1	YDR301W	YER135C	P40082	130 aa		1.26	□□□□□ -2.21
CFT1	YDR301W	CAX4	P53223	239 aa		1.26	□□□□□ -2.21
CFT1	YDR301W	AIM34	Q03673	198 aa		1.26	□□□□□ -2.21
CFT1	YDR301W	PPT2	Q12036	173 aa		1.26	□□□□□ -2.21
CFT1	YDR301W	RPB11	P38902	120 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	TEM1	P38987	245 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	YAR029W	P39549	74 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	HIT1	P46973	164 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	YGL118C	P53132	145 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	SDS23	P53172	527 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	YDR042C	Q03205	200 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	CUE4	Q04201	117 aa	Predicted RBP	1.25	□□□□□ -2.21
CFT1	YDR301W	FSF1	Q12029	327 aa	Known RBP	1.25	□□□□□ -2.21
CFT1	YDR301W	LSO2	Q3E772	92 aa	Known RBP	1.25	□□□□□ -2.21
CFT1	YDR301W	YBR121C-A	P0C5L4	52 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	SNU13	P39990	126 aa	Known RBP	1.25	□□□□□ -2.21
CFT1	YDR301W	YMR141C	P40211	102 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	ERI1	P62651	68 aa	Known RBP	1.25	□□□□□ -2.21
CFT1	YDR301W	CYT2	Q00873	224 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	PRM7	Q12459	698 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	YCR024C-B	Q3E7Z8	88 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	YNR034W-A	Q3E841	98 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	YPR010C-A	A5Z2X5	72 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	TRP1	P00912	224 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	POR1	P04840	283 aa	Known RBP	1.25	□□□□□ -2.21
CFT1	YDR301W	SEC72	P39742	193 aa	Known RBP	1.25	□□□□□ -2.21
CFT1	YDR301W	RRT13	P40042	185 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	DXO1	Q06349	442 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	NAT3	Q06504	195 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	YCR075W-A	Q3E830	75 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	URA2	P07259	2214 aa	Known RBP	1.25	□□□□□ -2.21
CFT1	YDR301W	YGL010W	P25338	174 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	SIM1	P40472	476 aa		1.25	□□□□□ -2.21
CFT1	YDR301W	YLR050C	Q12155	161 aa	Known RBP	1.25	□□□□□ -2.21
CFT1	YDR301W	YDL085C-A	Q3E7B7	68 aa	Known RBP	1.25	□□□□□ -2.21
CFT1	YDR301W	ADH2	P00331	348 aa	Known RBP	1.24	□□□□□ -2.21
CFT1	YDR301W	PAU16	P35994	123 aa		1.24	□□□□□ -2.21
CFT1	YDR301W	YBR090C	P38253	122 aa		1.24	□□□□□ -2.21
CFT1	YDR301W	KRE9	P39005	276 aa		1.24	□□□□□ -2.21
CFT1	YDR301W	YER076C	P40049	302 aa		1.24	□□□□□ -2.21
CFT1	YDR301W	NSE4	P43124	402 aa		1.24	□□□□□ -2.21
CFT1	YDR301W	YFR057W	P43625	151 aa		1.24	□□□□□ -2.21
CFT1	YDR301W	YPS5	P53057	165 aa		1.24	□□□□□ -2.21
CFT1	YDR301W	MST27	P53176	234 aa		1.24	□□□□□ -2.21
CFT1	YDR301W	YGR025W	P53216	100 aa		1.24	□□□□□ -2.21
CFT1	YDR301W	SGF11	Q03067	99 aa		1.24	□□□□□ -2.21
CFT1	YDR301W	YLR112W	Q12130	139 aa		1.24	□□□□□ -2.21

Retrieved 100 of 5,963 RNA–protein pairs in 59.3 ms