RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C GIM5Q04493 163 aa-0.7□□□□□ -2.52
PCF11YDR228C FMP27Q06179 2628 aa-0.71□□□□□ -2.52
PCF11YDR228C HYM1P32464 399 aa-0.71□□□□□ -2.52
PCF11YDR228C QCR10P37299 77 aa-0.71□□□□□ -2.52
PCF11YDR228C YBR016WP38216 128 aa-0.71□□□□□ -2.52
PCF11YDR228C SHU1P38751 150 aa-0.71□□□□□ -2.52
PCF11YDR228C CYC2P38909 366 aa-0.71□□□□□ -2.52
PCF11YDR228C CYB5P40312 120 aa-0.71□□□□□ -2.52
PCF11YDR228C YIL086CP40503 102 aa-0.71□□□□□ -2.52
PCF11YDR228C NSL1Q12143 216 aa-0.71□□□□□ -2.52
PCF11YDR228C VPS51P36116 164 aa-0.72□□□□□ -2.52
PCF11YDR228C YGR164WP53291 111 aa-0.72□□□□□ -2.52
PCF11YDR228C ARC19P33204 171 aaKnown RBP-0.73□□□□□ -2.53
PCF11YDR228C YAL064WP39711 94 aa-0.73□□□□□ -2.53
PCF11YDR228C RPC19P28000 142 aaKnown RBP-0.73□□□□□ -2.53
PCF11YDR228C SUI1P32911 108 aaKnown RBP-0.73□□□□□ -2.53
PCF11YDR228C YLR285C-AQ3E771 56 aa-0.73□□□□□ -2.53
PCF11YDR228C YCR108CQ3E819 63 aa-0.73□□□□□ -2.53
PCF11YDR228C RPS11AP0CX47 156 aaKnown RBP-0.74□□□□□ -2.53
PCF11YDR228C RPS11BP0CX48 156 aaKnown RBP-0.74□□□□□ -2.53
PCF11YDR228C PET54P10834 293 aa-0.74□□□□□ -2.53
PCF11YDR228C YCL048W-AQ2V2Q2 79 aa-0.74□□□□□ -2.53
PCF11YDR228C SLO1Q3E784 85 aa-0.74□□□□□ -2.53
PCF11YDR228C MPC1P53157 130 aaKnown RBP-0.75□□□□□ -2.53
PCF11YDR228C YPL261CQ08976 102 aa-0.75□□□□□ -2.53
PCF11YDR228C COX19Q3E731 98 aa-0.75□□□□□ -2.53
PCF11YDR228C YLR363W-AQ3E747 85 aa-0.75□□□□□ -2.53
PCF11YDR228C TOR1P35169 2470 aa-0.76□□□□□ -2.53
PCF11YDR228C PMD1P32634 1753 aa-0.76□□□□□ -2.53
PCF11YDR228C TRM732Q03496 1420 aa-0.76□□□□□ -2.53
PCF11YDR228C YKL044WP36092 106 aa-0.76□□□□□ -2.53
PCF11YDR228C MPC2P38857 129 aa-0.76□□□□□ -2.53
PCF11YDR228C GCN1P33892 2672 aaKnown RBP-0.76□□□□□ -2.53
PCF11YDR228C ERV14P53173 138 aa-0.77□□□□□ -2.53
PCF11YDR228C YDR366CP87287 132 aa-0.77□□□□□ -2.53
PCF11YDR228C YIL014C-AQ02598 104 aa-0.77□□□□□ -2.53
PCF11YDR228C YDR381C-AQ3E6R5 114 aa-0.77□□□□□ -2.53
PCF11YDR228C TOP2P06786 1428 aaKnown RBP-0.77□□□□□ -2.53
PCF11YDR228C YJR107C-AP0CT86 78 aa-0.78□□□□□ -2.53
PCF11YDR228C RPL14AP36105 138 aaKnown RBP-0.78□□□□□ -2.53
PCF11YDR228C ATG38Q05789 226 aaKnown RBP-0.78□□□□□ -2.53
PCF11YDR228C YDR246W-AQ3E763 66 aa-0.78□□□□□ -2.53
PCF11YDR228C TY1B-BLQ12490 1755 aa-0.78□□□□□ -2.53
PCF11YDR228C RAD50P12753 1312 aa-0.78□□□□□ -2.53
PCF11YDR228C DNA2P38859 1522 aa-0.78□□□□□ -2.53
PCF11YDR228C SEN1Q00416 2231 aaKnown RBP-0.78□□□□□ -2.53
PCF11YDR228C SEC59P20048 519 aa-0.78□□□□□ -2.53
PCF11YDR228C YCR050CP25630 102 aa-0.78□□□□□ -2.53
PCF11YDR228C RPC10P40422 70 aa-0.78□□□□□ -2.53
PCF11YDR228C ELC1Q03071 99 aa-0.78□□□□□ -2.53
PCF11YDR228C YRF1-2P40105 1681 aa-0.79□□□□□ -2.54
PCF11YDR228C YLR255CO13574 117 aa-0.79□□□□□ -2.54
PCF11YDR228C YJL197C-AP0C5P0 93 aa-0.8□□□□□ -2.54
PCF11YDR228C RPS29AP41057 56 aaKnown RBP-0.8□□□□□ -2.54
PCF11YDR228C IMP2P46972 177 aa-0.8□□□□□ -2.54
PCF11YDR228C YGR039WP53225 103 aa-0.8□□□□□ -2.54
PCF11YDR228C FRQ1Q06389 190 aa-0.8□□□□□ -2.54
PCF11YDR228C TY1B-LR3P0C2I6 1755 aaKnown RBP-0.8□□□□□ -2.54
PCF11YDR228C TY1B-PR3P0C2J1 1755 aaKnown RBP-0.8□□□□□ -2.54
PCF11YDR228C DYN1P36022 4092 aa-0.8□□□□□ -2.54
PCF11YDR228C RPS28BP0C0X0 67 aaKnown RBP-0.8□□□□□ -2.54
PCF11YDR228C HMRA2P0CY13 119 aa-0.8□□□□□ -2.54
PCF11YDR228C DER1P38307 211 aa-0.8□□□□□ -2.54
PCF11YDR228C CNL1Q06333 122 aa-0.8□□□□□ -2.54
PCF11YDR228C RPS28AQ3E7X9 67 aaPredicted RBP-0.8□□□□□ -2.54
PCF11YDR228C TEL1P38110 2787 aa-0.8□□□□□ -2.54
PCF11YDR228C AME1P38313 324 aa-0.81□□□□□ -2.54
PCF11YDR228C TRS20P38334 175 aa-0.81□□□□□ -2.54
PCF11YDR228C YGR042WP53227 271 aa-0.81□□□□□ -2.54
PCF11YDR228C PDX3P38075 228 aaKnown RBP-0.82□□□□□ -2.54
PCF11YDR228C COX23P38824 151 aa-0.82□□□□□ -2.54
PCF11YDR228C RPL38P49167 78 aaKnown RBP-0.82□□□□□ -2.54
PCF11YDR228C PCC1Q3E833 88 aa-0.82□□□□□ -2.54
PCF11YDR228C YCR101CP25607 182 aa-0.82□□□□□ -2.54
PCF11YDR228C MRPL38P35996 138 aaPredicted RBP-0.82□□□□□ -2.54
PCF11YDR228C RPL14BP38754 138 aaKnown RBP-0.82□□□□□ -2.54
PCF11YDR228C PAM16P42949 149 aa-0.82□□□□□ -2.54
PCF11YDR228C GPI19Q04082 140 aa-0.82□□□□□ -2.54
PCF11YDR228C YOR097CQ12274 175 aaPredicted RBP-0.82□□□□□ -2.54
PCF11YDR228C YPL038W-AQ3E7B4 63 aa-0.82□□□□□ -2.54
PCF11YDR228C ACP1P32463 125 aa-0.83□□□□□ -2.54
PCF11YDR228C RPL22BP56628 122 aaKnown RBP-0.83□□□□□ -2.54
PCF11YDR228C AIM11P87275 137 aa-0.83□□□□□ -2.54
PCF11YDR228C YOL118CQ08259 102 aa-0.83□□□□□ -2.54
PCF11YDR228C SPC3Q12133 184 aa-0.83□□□□□ -2.54
PCF11YDR228C OST5Q92316 86 aa-0.83□□□□□ -2.54
PCF11YDR228C POP7P38291 140 aa-0.84□□□□□ -2.54
PCF11YDR228C SNN1P48232 102 aa-0.84□□□□□ -2.54
PCF11YDR228C YGR025WP53216 100 aa-0.84□□□□□ -2.54
PCF11YDR228C TVP18Q04767 167 aa-0.84□□□□□ -2.54
PCF11YDR228C LSM6Q06406 86 aaKnown RBP-0.84□□□□□ -2.54
PCF11YDR228C CMC2Q3E7A4 109 aa-0.84□□□□□ -2.54
PCF11YDR228C YBR292CP38357 123 aa-0.84□□□□□ -2.54
PCF11YDR228C COX12Q01519 83 aa-0.84□□□□□ -2.54
PCF11YDR228C SNF11P38956 169 aa-0.85□□□□□ -2.55
PCF11YDR228C RBL2P48606 106 aaKnown RBP-0.85□□□□□ -2.55
PCF11YDR228C CAT8P39113 1433 aa-0.85□□□□□ -2.55
PCF11YDR228C MOG1P47123 218 aa-0.86□□□□□ -2.55
PCF11YDR228C PAU12P53343 120 aa-0.86□□□□□ -2.55
PCF11YDR228C MRX7P53869 86 aa-0.86□□□□□ -2.55
Retrieved 100 of 5,963 RNA–protein pairs in 158 ms