RNA–Protein interactions for RNA: YBR260C

RGD1, Transcript of GTPase-activating protein (RhoGAP) for Rho3p and Rho4p, yeast

Gene RGD1, Length 2,001 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RGD1	YBR260C	NCA3	P46955	337 aa		4.96	□□□□□ -1.62
RGD1	YBR260C	SBH1	P52870	82 aa		4.96	□□□□□ -1.62
RGD1	YBR260C	MRPL23	Q12487	163 aa	Predicted RBP	4.96	□□□□□ -1.62
RGD1	YBR260C	Q0255	P03881	472 aa		4.95	□□□□□ -1.62
RGD1	YBR260C	SWS2	P53937	143 aa		4.95	□□□□□ -1.62
RGD1	YBR260C	DAD4	P69851	72 aa		4.95	□□□□□ -1.62
RGD1	YBR260C	YLR042C	Q07990	161 aa		4.95	□□□□□ -1.62
RGD1	YBR260C	DAP1	Q12091	152 aa		4.95	□□□□□ -1.62
RGD1	YBR260C	YPR053C	Q6Q5F3	151 aa		4.95	□□□□□ -1.62
RGD1	YBR260C	IGO2	Q9P305	131 aa		4.95	□□□□□ -1.62
RGD1	YBR260C	SEC16	P48415	2195 aa	Known RBP	4.95	□□□□□ -1.62
RGD1	YBR260C	YSF3	P0C074	85 aa	Predicted RBP	4.94	□□□□□ -1.62
RGD1	YBR260C	RPL2A	P0CX45	254 aa	Known RBP	4.94	□□□□□ -1.62
RGD1	YBR260C	RPL2B	P0CX46	254 aa	Known RBP	4.94	□□□□□ -1.62
RGD1	YBR260C	YCR006C	P25350	157 aa		4.94	□□□□□ -1.62
RGD1	YBR260C	RPL32	P38061	130 aa	Known RBP	4.94	□□□□□ -1.62
RGD1	YBR260C	LYS1	P38998	373 aa	RIP-Chip data	4.94	□□□□□ -1.62	not detected
RGD1	YBR260C	YFL051C	P43552	160 aa		4.94	□□□□□ -1.62
RGD1	YBR260C	MOT3	P54785	490 aa	Known RBP	4.94	□□□□□ -1.62
RGD1	YBR260C	YMR320W	Q04897	101 aa		4.94	□□□□□ -1.62
RGD1	YBR260C	YGL258W-A	Q3E740	77 aa		4.94	□□□□□ -1.62
RGD1	YBR260C	AQY1	P0CD91	305 aa		4.94	□□□□□ -1.62
RGD1	YBR260C	YCR050C	P25630	102 aa		4.94	□□□□□ -1.62
RGD1	YBR260C	YIA6	P40556	373 aa		4.94	□□□□□ -1.62
RGD1	YBR260C	GON7	P46984	123 aa		4.94	□□□□□ -1.62
RGD1	YBR260C	MST27	P53176	234 aa		4.94	□□□□□ -1.62
RGD1	YBR260C	COX12	Q01519	83 aa		4.94	□□□□□ -1.62
RGD1	YBR260C	YMR254C	Q04838	102 aa		4.94	□□□□□ -1.62
RGD1	YBR260C	BEM2	P39960	2167 aa	Known RBP	4.93	□□□□□ -1.62
RGD1	YBR260C	HMRA2	P0CY13	119 aa		4.93	□□□□□ -1.62
RGD1	YBR260C	YHL042W	P38729	150 aa		4.93	□□□□□ -1.62
RGD1	YBR260C	UPS1	Q05776	175 aa		4.93	□□□□□ -1.62
RGD1	YBR260C	TIM22	Q12328	207 aa		4.93	□□□□□ -1.62
RGD1	YBR260C	PCL2	P25693	308 aa		4.92	□□□□□ -1.62
RGD1	YBR260C	ADH5	P38113	351 aa	Known RBP	4.92	□□□□□ -1.62
RGD1	YBR260C	LTP1	P40347	161 aa		4.92	□□□□□ -1.62
RGD1	YBR260C	ATP23	P53722	227 aa		4.92	□□□□□ -1.62
RGD1	YBR260C	ACC1	Q00955	2233 aa	Known RBP	4.92	□□□□□ -1.62
RGD1	YBR260C	RTG1	P32607	177 aa		4.92	□□□□□ -1.62
RGD1	YBR260C	YJR115W	P47152	169 aa		4.92	□□□□□ -1.62
RGD1	YBR260C	TRS23	Q03784	219 aa		4.92	□□□□□ -1.62
RGD1	YBR260C	VPS63	O13549	108 aa		4.91	□□□□□ -1.62
RGD1	YBR260C	RPS8A	P0CX39	200 aa	Known RBP	4.9	□□□□□ -1.62
RGD1	YBR260C	RPS8B	P0CX40	200 aa	Known RBP	4.9	□□□□□ -1.62
RGD1	YBR260C	RPS27A	P35997	82 aa	Known RBP	4.9	□□□□□ -1.62
RGD1	YBR260C	RPS27B	P38711	82 aa		4.9	□□□□□ -1.62
RGD1	YBR260C	HSK3	P69852	69 aa		4.9	□□□□□ -1.62
RGD1	YBR260C	YDR524C-B	Q3E6R4	66 aa		4.9	□□□□□ -1.62
RGD1	YBR260C	YPL038W-A	Q3E7B4	63 aa		4.9	□□□□□ -1.62
RGD1	YBR260C	MDM35	O60200	86 aa		4.9	□□□□□ -1.63
RGD1	YBR260C	PBI2	P0CT04	75 aa	Known RBP	4.9	□□□□□ -1.63
RGD1	YBR260C	RPS16A	P0CX51	143 aa	Known RBP	4.9	□□□□□ -1.63
RGD1	YBR260C	RPS16B	P0CX52	143 aa	Known RBP	4.9	□□□□□ -1.63
RGD1	YBR260C	AGA1	P32323	725 aa		4.9	□□□□□ -1.63
RGD1	YBR260C	TOM6	P33448	61 aa		4.9	□□□□□ -1.63
RGD1	YBR260C	COA3	Q3E7B2	85 aa		4.9	□□□□□ -1.63
RGD1	YBR260C	FPR2	P32472	135 aa		4.89	□□□□□ -1.63
RGD1	YBR260C	MBB1	P39534	108 aa		4.89	□□□□□ -1.63
RGD1	YBR260C	YNL217W	P40152	326 aa		4.89	□□□□□ -1.63
RGD1	YBR260C	MRPL19	P53875	158 aa		4.89	□□□□□ -1.63
RGD1	YBR260C	MGR2	Q02889	113 aa		4.89	□□□□□ -1.63
RGD1	YBR260C	PRM7	Q12459	698 aa		4.89	□□□□□ -1.63
RGD1	YBR260C	NAG1	Q8TGN9	163 aa		4.89	□□□□□ -1.63
RGD1	YBR260C	BRR2	P32639	2163 aa	Known RBP	4.89	□□□□□ -1.63
RGD1	YBR260C	YCR022C	P25620	114 aa		4.89	□□□□□ -1.63
RGD1	YBR260C	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	not detected
RGD1	YBR260C	AIM11	P87275	137 aa		4.89	□□□□□ -1.63
RGD1	YBR260C	IRC23	Q08416	157 aa		4.89	□□□□□ -1.63
RGD1	YBR260C	YMR31	P19955	123 aa		4.88	□□□□□ -1.63
RGD1	YBR260C	YRA2	P36036	203 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
RGD1	YBR260C	YHL018W	P38744	120 aa	Predicted RBP	4.88	□□□□□ -1.63
RGD1	YBR260C	NIP7	Q08962	181 aa	Known RBP	4.88	□□□□□ -1.63
RGD1	YBR260C	YDR381C-A	Q3E6R5	114 aa		4.88	□□□□□ -1.63
RGD1	YBR260C	RPL42A	P0CX27	106 aa	Known RBP	4.87	□□□□□ -1.63
RGD1	YBR260C	RPL42B	P0CX28	106 aa	Known RBP	4.87	□□□□□ -1.63
RGD1	YBR260C	IES6	P32617	166 aa		4.87	□□□□□ -1.63
RGD1	YBR260C	YIL029C	P40538	142 aa		4.87	□□□□□ -1.63
RGD1	YBR260C	YGR018C	P53211	109 aa		4.87	□□□□□ -1.63
RGD1	YBR260C	YDR209C	Q03480	137 aa		4.87	□□□□□ -1.63
RGD1	YBR260C	RPS14A	P06367	137 aa	Known RBP	4.87	□□□□□ -1.63
RGD1	YBR260C	SVP26	P38869	228 aa		4.87	□□□□□ -1.63
RGD1	YBR260C	GLE2	P40066	365 aa		4.87	□□□□□ -1.63
RGD1	YBR260C	YNL190W	P53872	204 aa		4.87	□□□□□ -1.63
RGD1	YBR260C	YMR181C	Q03231	154 aa		4.87	□□□□□ -1.63
RGD1	YBR260C	TRP1	P00912	224 aa		4.86	□□□□□ -1.63
RGD1	YBR260C	RRT13	P40042	185 aa		4.86	□□□□□ -1.63
RGD1	YBR260C	YDR114C	Q04597	100 aa		4.86	□□□□□ -1.63
RGD1	YBR260C	YLR194C	Q05777	254 aa		4.86	□□□□□ -1.63
RGD1	YBR260C	PBA1	Q05778	276 aa		4.86	□□□□□ -1.63
RGD1	YBR260C	POL2	P21951	2222 aa	Known RBP	4.86	□□□□□ -1.63
RGD1	YBR260C	PFY1	P07274	126 aa		4.85	□□□□□ -1.63
RGD1	YBR260C	AIM19	P40502	157 aa		4.85	□□□□□ -1.63
RGD1	YBR260C	PCP1	P53259	346 aa		4.85	□□□□□ -1.63
RGD1	YBR260C	KSH1	Q8TGJ3	72 aa		4.85	□□□□□ -1.63
RGD1	YBR260C	MED6	P38782	295 aa		4.85	□□□□□ -1.63
RGD1	YBR260C	TIM10	P87108	93 aa		4.85	□□□□□ -1.63
RGD1	YBR260C	RPL28	P02406	149 aa	Known RBP	4.84	□□□□□ -1.63
RGD1	YBR260C	RPL18A	P0CX49	186 aa	Known RBP	4.84	□□□□□ -1.63
RGD1	YBR260C	RPL18B	P0CX50	186 aa	Known RBP	4.84	□□□□□ -1.63
RGD1	YBR260C	YBR209W	P38311	105 aa		4.84	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms