RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NPL4YBR170C TOP2P06786 1428 aaKnown RBP2.2□□□□□ -2.06
NPL4YBR170C VAR1P02381 398 aa2.2□□□□□ -2.06
NPL4YBR170C YOR289WQ12012 251 aaPredicted RBP2.2□□□□□ -2.06
NPL4YBR170C PFY1P07274 126 aa2.19□□□□□ -2.06
NPL4YBR170C AIM4P38305 123 aaPredicted RBP2.19□□□□□ -2.06
NPL4YBR170C YIL014C-AQ02598 104 aa2.19□□□□□ -2.06
NPL4YBR170C YLR194CQ05777 254 aa2.19□□□□□ -2.06
NPL4YBR170C STU1P38198 1513 aa2.19□□□□□ -2.06
NPL4YBR170C COA4Q05809 96 aa2.18□□□□□ -2.06
NPL4YBR170C HPA2Q06592 156 aa2.18□□□□□ -2.06
NPL4YBR170C YPL261CQ08976 102 aa2.18□□□□□ -2.06
NPL4YBR170C FYV7Q12247 151 aa2.18□□□□□ -2.06
NPL4YBR170C OCA6Q12454 224 aa2.18□□□□□ -2.06
NPL4YBR170C TSC11P40061 1430 aa2.18□□□□□ -2.06
NPL4YBR170C YLR365WQ7LIF2 110 aa2.17□□□□□ -2.06
NPL4YBR170C PDR10P51533 1564 aa2.17□□□□□ -2.06
NPL4YBR170C YPK9Q12697 1472 aa2.17□□□□□ -2.06
NPL4YBR170C MED11Q99278 115 aa2.17□□□□□ -2.06
NPL4YBR170C MMS1Q06211 1407 aa2.16□□□□□ -2.06
NPL4YBR170C POL1P13382 1468 aa2.16□□□□□ -2.06
NPL4YBR170C SPT6P23615 1451 aaKnown RBP2.16□□□□□ -2.06
NPL4YBR170C SCC2Q04002 1493 aa2.16□□□□□ -2.06
NPL4YBR170C YER187WP40102 141 aa2.16□□□□□ -2.06
NPL4YBR170C OST5Q92316 86 aa2.16□□□□□ -2.06
NPL4YBR170C SMC4Q12267 1418 aa2.16□□□□□ -2.06
NPL4YBR170C YJL197C-AP0C5P0 93 aa2.15□□□□□ -2.07
NPL4YBR170C GNA1P43577 159 aaPredicted RBP2.15□□□□□ -2.07
NPL4YBR170C IRC20Q06554 1556 aa2.15□□□□□ -2.07
NPL4YBR170C RPO31P04051 1460 aa2.15□□□□□ -2.07
NPL4YBR170C YGR164WP53291 111 aa2.14□□□□□ -2.07
NPL4YBR170C IRC21Q04772 201 aa2.14□□□□□ -2.07
NPL4YBR170C DAD1Q12248 94 aa2.14□□□□□ -2.07
NPL4YBR170C THO2P53552 1597 aaKnown RBP2.14□□□□□ -2.07
NPL4YBR170C SIN3P22579 1536 aa2.14□□□□□ -2.07
NPL4YBR170C MLP2P40457 1679 aa2.14□□□□□ -2.07
NPL4YBR170C YAR064WP39563 99 aa2.14□□□□□ -2.07
NPL4YBR170C YKL068W-AQ3E826 78 aa2.14□□□□□ -2.07
NPL4YBR170C PCC1Q3E833 88 aa2.14□□□□□ -2.07
NPL4YBR170C BPT1P14772 1559 aa2.13□□□□□ -2.07
NPL4YBR170C SSK2P53599 1579 aa2.13□□□□□ -2.07
NPL4YBR170C PAU2P32612 120 aa2.13□□□□□ -2.07
NPL4YBR170C YEA6P39953 335 aa2.13□□□□□ -2.07
NPL4YBR170C YNL122CP53921 115 aaPredicted RBP2.13□□□□□ -2.07
NPL4YBR170C CCW12Q12127 133 aa2.13□□□□□ -2.07
NPL4YBR170C HIR3P47171 1648 aa2.13□□□□□ -2.07
NPL4YBR170C TY1B-DR4Q07793 1604 aa2.13□□□□□ -2.07
NPL4YBR170C MYO4P32492 1471 aa2.13□□□□□ -2.07
NPL4YBR170C REV3P14284 1504 aa2.13□□□□□ -2.07
NPL4YBR170C HAP2P06774 265 aa2.12□□□□□ -2.07
NPL4YBR170C YSF3P0C074 85 aaPredicted RBP2.12□□□□□ -2.07
NPL4YBR170C YCR101CP25607 182 aa2.12□□□□□ -2.07
NPL4YBR170C DNA2P38859 1522 aa2.12□□□□□ -2.07
NPL4YBR170C PAU24P38155 120 aa2.11□□□□□ -2.07
NPL4YBR170C YMR103CQ04436 120 aa2.11□□□□□ -2.07
NPL4YBR170C TY1B-HO13535 1793 aa2.11□□□□□ -2.07
NPL4YBR170C GEA1P47102 1408 aaPredicted RBP2.11□□□□□ -2.07
NPL4YBR170C SWR1Q05471 1514 aa2.11□□□□□ -2.07
NPL4YBR170C YBR090CP38253 122 aa2.11□□□□□ -2.07
NPL4YBR170C COX23P38824 151 aa2.11□□□□□ -2.07
NPL4YBR170C SNN1P48232 102 aa2.11□□□□□ -2.07
NPL4YBR170C RPL22BP56628 122 aaKnown RBP2.11□□□□□ -2.07
NPL4YBR170C NUP159P40477 1460 aa2.1□□□□□ -2.07
NPL4YBR170C SNQ2P32568 1501 aaKnown RBP2.1□□□□□ -2.07
NPL4YBR170C YCF1P39109 1515 aaKnown RBP2.1□□□□□ -2.07
NPL4YBR170C YCR001WP25347 104 aa2.1□□□□□ -2.07
NPL4YBR170C SRX1P36077 127 aa2.1□□□□□ -2.07
NPL4YBR170C YIL163CP40448 117 aa2.1□□□□□ -2.07
NPL4YBR170C GTT1P40582 234 aa2.1□□□□□ -2.07
NPL4YBR170C YPL225WQ08971 146 aaKnown RBP2.1□□□□□ -2.07
NPL4YBR170C YOL013W-AP0C272 63 aaPredicted RBP2.09□□□□□ -2.07
NPL4YBR170C UBC5P15732 148 aa2.09□□□□□ -2.07
NPL4YBR170C BUD23P25627 275 aaPredicted RBP2.09□□□□□ -2.07
NPL4YBR170C YIR020CP40575 100 aa2.09□□□□□ -2.07
NPL4YBR170C HFA1P32874 2273 aa2.09□□□□□ -2.08
NPL4YBR170C SLH1P53327 1967 aaKnown RBP2.09□□□□□ -2.08
NPL4YBR170C KOG1P38873 1557 aa2.08□□□□□ -2.08
NPL4YBR170C ESP1Q03018 1630 aa2.08□□□□□ -2.08
NPL4YBR170C HUR1P45820 110 aa2.08□□□□□ -2.08
NPL4YBR170C GCN2P15442 1659 aa2.07□□□□□ -2.08
NPL4YBR170C PDR5P33302 1511 aaKnown RBP2.07□□□□□ -2.08
NPL4YBR170C VPS15P22219 1454 aa2.07□□□□□ -2.08
NPL4YBR170C RPL22AP05749 121 aaKnown RBP2.07□□□□□ -2.08
NPL4YBR170C PAU19P0CE85 124 aa2.07□□□□□ -2.08
NPL4YBR170C PAU3P25610 124 aa2.07□□□□□ -2.08
NPL4YBR170C POR2P40478 281 aa2.07□□□□□ -2.08
NPL4YBR170C YJL009WP47078 108 aa2.07□□□□□ -2.08
NPL4YBR170C YCL001W-BQ96VH2 84 aa2.07□□□□□ -2.08
NPL4YBR170C ESC1Q03661 1658 aaKnown RBP2.06□□□□□ -2.08
NPL4YBR170C GDB1Q06625 1536 aa2.06□□□□□ -2.08
NPL4YBR170C GEA2P39993 1459 aaKnown RBP2.06□□□□□ -2.08
NPL4YBR170C LYS2P07702 1392 aa2.06□□□□□ -2.08
NPL4YBR170C KRE5P22023 1365 aa2.06□□□□□ -2.08
NPL4YBR170C YMR007WQ03675 126 aa2.06□□□□□ -2.08
NPL4YBR170C YLR285C-AQ3E771 56 aa2.06□□□□□ -2.08
NPL4YBR170C MIC10Q96VH5 97 aa2.06□□□□□ -2.08
NPL4YBR170C PDR15Q04182 1529 aaKnown RBP2.06□□□□□ -2.08
NPL4YBR170C TY3B-GQ99315 1547 aa2.06□□□□□ -2.08
NPL4YBR170C TY3B-IQ7LHG5 1498 aaKnown RBP2.06□□□□□ -2.08
NPL4YBR170C YBR013CP38215 129 aa2.05□□□□□ -2.08
NPL4YBR170C CYB5P40312 120 aa2.05□□□□□ -2.08
Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms