RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 GOLGA7BQ2TAP0 167 aa13.04□□□□□ -0.32
LINC00339-213ENST00000642137 ASTE1Q2TB18 679 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-213ENST00000642137 TDRD12Q587J7 1177 aaKnown RBP13.04□□□□□ -0.32
LINC00339-213ENST00000642137 FAM35AQ86V20 835 aa13.04□□□□□ -0.32
LINC00339-213ENST00000642137 VPS36Q86VN1 386 aa13.04□□□□□ -0.32
LINC00339-213ENST00000642137 TTC30AQ86WT1 665 aa13.04□□□□□ -0.32
LINC00339-213ENST00000642137 GPIHBP1Q8IV16 184 aa13.04□□□□□ -0.32
LINC00339-213ENST00000642137 LRRC8AQ8IWT6 810 aa13.04□□□□□ -0.32
LINC00339-213ENST00000642137 SLC30A5Q8TAD4 765 aa13.04□□□□□ -0.32
LINC00339-213ENST00000642137 SLC22A17Q8WUG5 538 aa13.04□□□□□ -0.32
LINC00339-213ENST00000642137 SLC20A1Q8WUM9 679 aa13.04□□□□□ -0.32
LINC00339-213ENST00000642137 SLC35F5Q8WV83 523 aa13.04□□□□□ -0.32
LINC00339-213ENST00000642137 C8orf48Q96LL4 319 aa13.04□□□□□ -0.32
LINC00339-213ENST00000642137 CEP295NLQ96MC4 621 aa13.04□□□□□ -0.32
LINC00339-213ENST00000642137 PGLYRP2Q96PD5 576 aa13.04□□□□□ -0.32
LINC00339-213ENST00000642137 BAG1Q99933 345 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-213ENST00000642137 PRDM12Q9H4Q4 367 aa13.04□□□□□ -0.32
LINC00339-213ENST00000642137 NSUN3Q9H649 340 aaKnown RBP13.04□□□□□ -0.32
LINC00339-213ENST00000642137 NHEJ1Q9H9Q4 299 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-213ENST00000642137 ABI2Q9NYB9 513 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-213ENST00000642137 DPP7Q9UHL4 492 aa13.04□□□□□ -0.32
LINC00339-213ENST00000642137 TRIM66O15016 1216 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 AP1G2O75843 785 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 CSPG5O95196 566 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 SEC24AO95486 1093 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 GLUD1P00367 558 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 PLEKP08567 350 aaPredicted RBP13.03□□□□□ -0.32
LINC00339-213ENST00000642137 UNGP13051 313 aaPredicted RBP13.03□□□□□ -0.32
LINC00339-213ENST00000642137 NPR3P17342 541 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 GRIK1P39086 918 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 PDE4CQ08493 712 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 BST2Q10589 180 aaKnown RBP13.03□□□□□ -0.32
LINC00339-213ENST00000642137 PPP1R2P3Q6NXS1 205 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 DENND1BQ6P3S1 775 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 CLEC20AQ6ZU45 233 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 CCDC149Q6ZUS6 474 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 ADGRD2Q7Z7M1 963 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 CCDC170Q8IYT3 715 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 WDTC1Q8N5D0 677 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 TMEM35BQ8NCS4 154 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 KREMEN2Q8NCW0 462 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 CCDC112Q8NEF3 446 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 OLIG1Q8TAK6 271 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 UBA3Q8TBC4 463 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 STK32AQ8WU08 396 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 HSFY1Q96LI6 401 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 CCDC42Q96M95 316 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 PCDHB18PQ96TA0 734 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 SMOQ99835 787 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 PLEKHA4Q9H4M7 779 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 CYP4F11Q9HBI6 524 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 ADAMTS1Q9UHI8 967 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 FBXW11Q9UKB1 542 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 SLC27A5Q9Y2P5 690 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 CEP83Q9Y592 693 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 ATG2AQ2TAZ0 1938 aa13.03□□□□□ -0.32
LINC00339-213ENST00000642137 COL4A4P53420 1690 aaPredicted RBP13.02□□□□□ -0.32
LINC00339-213ENST00000642137 PLXNA3P51805 1871 aa13.02□□□□□ -0.32
LINC00339-213ENST00000642137 M0QYV0 167 aa13.02□□□□□ -0.33
LINC00339-213ENST00000642137 DDX3XO00571 662 aaKnown RBP eCLIP13.02□□□□□ -0.33
LINC00339-213ENST00000642137 XPO1O14980 1071 aaKnown RBP13.02□□□□□ -0.33
LINC00339-213ENST00000642137 PER2O15055 1255 aa13.02□□□□□ -0.33
LINC00339-213ENST00000642137 BEST1O76090 585 aa13.02□□□□□ -0.33
LINC00339-213ENST00000642137 LSM8O95777 96 aaKnown RBP13.02□□□□□ -0.33
LINC00339-213ENST00000642137 PTMAP06454 111 aaKnown RBP13.02□□□□□ -0.33
LINC00339-213ENST00000642137 SSTR3P32745 418 aaPredicted RBP13.02□□□□□ -0.33
LINC00339-213ENST00000642137 RPL34P49207 117 aaKnown RBP13.02□□□□□ -0.33
LINC00339-213ENST00000642137 MAP3K7CLP57077 242 aa13.02□□□□□ -0.33
LINC00339-213ENST00000642137 RPL10AP62906 217 aaKnown RBP13.02□□□□□ -0.33
LINC00339-213ENST00000642137 KCNC3Q14003 757 aa13.02□□□□□ -0.33
LINC00339-213ENST00000642137 CLEC16AQ2KHT3 1053 aa13.02□□□□□ -0.33
LINC00339-213ENST00000642137 MGAT5BQ3V5L5 792 aa13.02□□□□□ -0.33
LINC00339-213ENST00000642137 RBM23Q86U06 439 aaKnown RBP13.02□□□□□ -0.33
LINC00339-213ENST00000642137 TMEM139Q8IV31 216 aa13.02□□□□□ -0.33
LINC00339-213ENST00000642137 ZMIZ2Q8NF64 920 aa13.02□□□□□ -0.33
LINC00339-213ENST00000642137 KCTD13Q8WZ19 329 aa13.02□□□□□ -0.33
LINC00339-213ENST00000642137 SECISBP2LQ93073 1101 aaKnown RBP13.02□□□□□ -0.33
LINC00339-213ENST00000642137 SPATA17Q96L03 361 aa13.02□□□□□ -0.33
LINC00339-213ENST00000642137 KCNK16Q96T55 309 aa13.02□□□□□ -0.33
LINC00339-213ENST00000642137 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.02□□□□□ -0.33
LINC00339-213ENST00000642137 CRISPLD1Q9H336 500 aa13.02□□□□□ -0.33
LINC00339-213ENST00000642137 DEF6Q9H4E7 631 aa13.02□□□□□ -0.33
LINC00339-213ENST00000642137 PNPLA8Q9NP80 782 aa13.02□□□□□ -0.33
LINC00339-213ENST00000642137 DMAP1Q9NPF5 467 aaPredicted RBP13.02□□□□□ -0.33
LINC00339-213ENST00000642137 CYLDQ9NQC7 956 aa13.02□□□□□ -0.33
LINC00339-213ENST00000642137 KRT82Q9NSB4 513 aa13.02□□□□□ -0.33
LINC00339-213ENST00000642137 MTCH2Q9Y6C9 303 aa13.02□□□□□ -0.33
LINC00339-213ENST00000642137 NRDCO43847 1150 aa13.01□□□□□ -0.33
LINC00339-213ENST00000642137 AKR1B10O60218 316 aa13.01□□□□□ -0.33
LINC00339-213ENST00000642137 RTN2O75298 545 aa13.01□□□□□ -0.33
LINC00339-213ENST00000642137 SPATA31D3P0C874 917 aa13.01□□□□□ -0.33
LINC00339-213ENST00000642137 CYLC1P35663 651 aaPredicted RBP13.01□□□□□ -0.33
LINC00339-213ENST00000642137 ACADSBP45954 432 aa13.01□□□□□ -0.33
LINC00339-213ENST00000642137 PLA2G4AP47712 749 aa13.01□□□□□ -0.33
LINC00339-213ENST00000642137 ALDH1A3P47895 512 aa13.01□□□□□ -0.33
LINC00339-213ENST00000642137 NRIP1P48552 1158 aa13.01□□□□□ -0.33
LINC00339-213ENST00000642137 CDR1P51861 262 aa13.01□□□□□ -0.33
LINC00339-213ENST00000642137 CACNA2D1P54289 1103 aa13.01□□□□□ -0.33
LINC00339-213ENST00000642137 SNX16P57768 344 aa13.01□□□□□ -0.33
LINC00339-213ENST00000642137 NOMO3P69849 1222 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms