RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 SHROOM3Q8TF72 1996 aa17.62■□□□□ 0.41
CLN3-264ENST00000637985 GJB3O75712 270 aa17.61■□□□□ 0.41
CLN3-264ENST00000637985 CYP11A1P05108 521 aa17.61■□□□□ 0.41
CLN3-264ENST00000637985 ATP2C1P98194 919 aaPredicted RBP17.61■□□□□ 0.41
CLN3-264ENST00000637985 SMARCB1Q12824 385 aa17.61■□□□□ 0.41
CLN3-264ENST00000637985 USP4Q13107 963 aa17.61■□□□□ 0.41
CLN3-264ENST00000637985 IL17AQ16552 155 aa17.61■□□□□ 0.41
CLN3-264ENST00000637985 GAB4Q2WGN9 574 aa17.61■□□□□ 0.41
CLN3-264ENST00000637985 RABEPKQ7Z6M1 372 aa17.61■□□□□ 0.41
CLN3-264ENST00000637985 KCTD17Q8N5Z5 321 aa17.61■□□□□ 0.41
CLN3-264ENST00000637985 SLC22A12Q96S37 553 aa17.61■□□□□ 0.41
CLN3-264ENST00000637985 LINC00597Q9H2U6 94 aa17.61■□□□□ 0.41
CLN3-264ENST00000637985 PCDHB9Q9Y5E1 797 aa17.61■□□□□ 0.41
CLN3-264ENST00000637985 CFAP46Q8IYW2 2715 aa17.6■□□□□ 0.41
CLN3-264ENST00000637985 A0A087WV48 116 aa17.6■□□□□ 0.41
CLN3-264ENST00000637985 SGK1O00141 431 aa17.6■□□□□ 0.41
CLN3-264ENST00000637985 TK2O00142 265 aa17.6■□□□□ 0.41
CLN3-264ENST00000637985 TADA3O75528 432 aa17.6■□□□□ 0.41
CLN3-264ENST00000637985 CLTAP09496 248 aa17.6■□□□□ 0.41
CLN3-264ENST00000637985 PAX3P23760 479 aa17.6■□□□□ 0.41
CLN3-264ENST00000637985 MCL1Q07820 350 aa17.6■□□□□ 0.41
CLN3-264ENST00000637985 ARL6IP4Q66PJ3 421 aaKnown RBP17.6■□□□□ 0.41
CLN3-264ENST00000637985 TOGARAM2Q6ZUX3 1019 aa17.6■□□□□ 0.41
CLN3-264ENST00000637985 ALLCQ8N6M5 410 aa17.6■□□□□ 0.41
CLN3-264ENST00000637985 IL17RCQ8NAC3 791 aa17.6■□□□□ 0.41
CLN3-264ENST00000637985 TXNDC5Q8NBS9 432 aaKnown RBP17.6■□□□□ 0.41
CLN3-264ENST00000637985 CRELD1Q96HD1 420 aa17.6■□□□□ 0.41
CLN3-264ENST00000637985 CYP2S1Q96SQ9 504 aa17.6■□□□□ 0.41
CLN3-264ENST00000637985 TMEM206Q9H813 350 aa17.6■□□□□ 0.41
CLN3-264ENST00000637985 POLMQ9NP87 494 aaPredicted RBP17.6■□□□□ 0.41
CLN3-264ENST00000637985 PP2D1A8MPX8 630 aa17.59■□□□□ 0.41
CLN3-264ENST00000637985 E9PMD0 336 aa17.59■□□□□ 0.41
CLN3-264ENST00000637985 AP5Z1O43299 807 aa17.59■□□□□ 0.41
CLN3-264ENST00000637985 XPOTO43592 962 aaKnown RBP17.59■□□□□ 0.41
CLN3-264ENST00000637985 HIP1RO75146 1068 aa17.59■□□□□ 0.41
CLN3-264ENST00000637985 SYPP08247 313 aa17.59■□□□□ 0.41
CLN3-264ENST00000637985 HSF5Q4G112 596 aaPredicted RBP17.59■□□□□ 0.41
CLN3-264ENST00000637985 HYIQ5T013 277 aa17.59■□□□□ 0.41
CLN3-264ENST00000637985 LARP1BQ659C4 914 aaKnown RBP17.59■□□□□ 0.41
CLN3-264ENST00000637985 GLRX5Q86SX6 157 aa17.59■□□□□ 0.41
CLN3-264ENST00000637985 SLCO6A1Q86UG4 719 aa17.59■□□□□ 0.41
CLN3-264ENST00000637985 HMGB4Q8WW32 186 aa17.59■□□□□ 0.41
CLN3-264ENST00000637985 NTPCRQ9BSD7 190 aaKnown RBP17.59■□□□□ 0.41
CLN3-264ENST00000637985 MMTAG2Q9BU76 263 aaKnown RBP17.59■□□□□ 0.41
CLN3-264ENST00000637985 TIPINQ9BVW5 301 aa17.59■□□□□ 0.41
CLN3-264ENST00000637985 HAPLN2Q9GZV7 340 aa17.59■□□□□ 0.41
CLN3-264ENST00000637985 ABI2Q9NYB9 513 aaPredicted RBP17.59■□□□□ 0.41
CLN3-264ENST00000637985 KIAA1522Q9P206 1035 aaPredicted RBP17.59■□□□□ 0.41
CLN3-264ENST00000637985 BCCIPQ9P287 314 aaKnown RBP eCLIP17.59■□□□□ 0.41
CLN3-264ENST00000637985 APOBEC2Q9Y235 224 aaKnown RBP17.59■□□□□ 0.41
CLN3-264ENST00000637985 LACTBL1A8MY62 500 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 SLC16A4O15374 487 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 CLDN3O15551 220 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 KLF8O95600 359 aaPredicted RBP17.58■□□□□ 0.4
CLN3-264ENST00000637985 NFATC1O95644 943 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 USP17L7P0C7H9 530 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 CSH1P0DML2 217 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 CSH2P0DML3 217 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 PLA2G2AP14555 144 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 CDC25AP30304 524 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 ZNF33AQ06730 810 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 MAPK7Q13164 816 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 SPATA1Q5VX52 437 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 ZPBP2Q6X784 338 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 TMPRSS7Q7RTY8 843 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 NAXDQ8IW45 347 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 SFTPA1Q8IWL2 248 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 SCUBE3Q8IX30 993 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 DEFB119Q8N690 84 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 STKLD1Q8NE28 680 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 TTC16Q8NEE8 873 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 SLC39A7Q92504 469 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 DRC1Q96MC2 740 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 TSPAN18Q96SJ8 248 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 C17orf75Q9HAS0 396 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 DSEQ9UL01 958 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 MAGED2Q9UNF1 606 aaPredicted RBP17.58■□□□□ 0.4
CLN3-264ENST00000637985 ZNF462Q96JM2 2506 aa17.58■□□□□ 0.4
CLN3-264ENST00000637985 TRAV19A0A0A6YYK7 116 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 PIRO00625 290 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 ADAM23O75077 832 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 CBFA2T3O75081 653 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 CKMP06732 381 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 ADRB2P07550 413 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 TCF3P15923 654 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 TNFSF9P41273 254 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 GPR15P49685 360 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 RPL6Q02878 288 aaKnown RBP17.57■□□□□ 0.4
CLN3-264ENST00000637985 PPP2R3AQ06190 1150 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 STRN3Q13033 797 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 EOGTQ5NDL2 527 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 C9orf57Q5W0N0 161 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 RINT1Q6NUQ1 792 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 C1orf186Q6ZWK4 172 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 SH3RF2Q8TEC5 729 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 MYRFLQ96LU7 910 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 TRPC7Q9HCX4 862 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 GCNT4Q9P109 453 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 KCNG1Q9UIX4 513 aa17.57■□□□□ 0.4
CLN3-264ENST00000637985 MYO18AQ92614 2054 aaKnown RBP17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms