RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 MTMR11A4FU01 709 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 PRR23AA6NEV1 266 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 PMM2O15305 246 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 LRRN2O75325 713 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 TPM2P07951 284 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 TRIM21P19474 475 aaKnown RBP19.3■□□□□ 0.68
CLN3-243ENST00000635973 LMO2P25791 158 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 CDR1P51861 262 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 SMARCB1Q12824 385 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 LRMPQ12912 555 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 NFE2Q16621 373 aaPredicted RBP19.3■□□□□ 0.68
CLN3-243ENST00000635973 TCP11X2Q5H9J9 407 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 TANGO2Q6ICL3 276 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 ASCL5Q7RTU5 278 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 HS6ST3Q8IZP7 471 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 TUBGCP2Q9BSJ2 902 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 SDCBP2Q9H190 292 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 SLITRK6Q9H5Y7 841 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 CYP3A43Q9HB55 503 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 FANCLQ9NW38 375 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 GCNT4Q9P109 453 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 CEP72Q9P209 647 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 YIPF1Q9Y548 306 aa19.3■□□□□ 0.68
CLN3-243ENST00000635973 BECN2A8MW95 431 aa19.29■□□□□ 0.68
CLN3-243ENST00000635973 CD58P19256 250 aa19.29■□□□□ 0.68
CLN3-243ENST00000635973 ZNF165P49910 485 aa19.29■□□□□ 0.68
CLN3-243ENST00000635973 DUSP4Q13115 394 aa19.29■□□□□ 0.68
CLN3-243ENST00000635973 MGAT5BQ3V5L5 792 aa19.29■□□□□ 0.68
CLN3-243ENST00000635973 FAM78AQ5JUQ0 283 aa19.29■□□□□ 0.68
CLN3-243ENST00000635973 SPATA2LQ8IUW3 424 aaPredicted RBP19.29■□□□□ 0.68
CLN3-243ENST00000635973 C1orf210Q8IVY1 113 aa19.29■□□□□ 0.68
CLN3-243ENST00000635973 ATAD1Q8NBU5 361 aa19.29■□□□□ 0.68
CLN3-243ENST00000635973 C2orf15Q8WU43 125 aaKnown RBP19.29■□□□□ 0.68
CLN3-243ENST00000635973 NT5C1BQ96P26 610 aa19.29■□□□□ 0.68
CLN3-243ENST00000635973 SEPT5Q99719 369 aaPredicted RBP19.29■□□□□ 0.68
CLN3-243ENST00000635973 BPIFA3Q9BQP9 254 aa19.29■□□□□ 0.68
CLN3-243ENST00000635973 FUCA2Q9BTY2 467 aa19.29■□□□□ 0.68
CLN3-243ENST00000635973 PLA2G2FQ9BZM2 168 aa19.29■□□□□ 0.68
CLN3-243ENST00000635973 GPR88Q9GZN0 384 aa19.29■□□□□ 0.68
CLN3-243ENST00000635973 DNAI2Q9GZS0 605 aa19.29■□□□□ 0.68
CLN3-243ENST00000635973 BRD9Q9H8M2 597 aa19.29■□□□□ 0.68
CLN3-243ENST00000635973 GTF3C4Q9UKN8 822 aa19.29■□□□□ 0.68
CLN3-243ENST00000635973 MRPS17Q9Y2R5 130 aaKnown RBP19.29■□□□□ 0.68
CLN3-243ENST00000635973 PCDHB5Q9Y5E4 795 aa19.29■□□□□ 0.68
CLN3-243ENST00000635973 FAM170BA6NMN3 283 aa19.28■□□□□ 0.68
CLN3-243ENST00000635973 SMTNL1A8MU46 457 aa19.28■□□□□ 0.68
CLN3-243ENST00000635973 NCAM2O15394 837 aa19.28■□□□□ 0.68
CLN3-243ENST00000635973 CDK11BP21127 795 aaKnown RBP19.28■□□□□ 0.68
CLN3-243ENST00000635973 MAPRE1Q15691 268 aaKnown RBP19.28■□□□□ 0.68
CLN3-243ENST00000635973 VWA3BQ502W6 1294 aa19.28■□□□□ 0.68
CLN3-243ENST00000635973 CDKAL1Q5VV42 579 aa19.28■□□□□ 0.68
CLN3-243ENST00000635973 ZC3H14Q6PJT7 736 aaKnown RBP19.28■□□□□ 0.68
CLN3-243ENST00000635973 C4orf50Q6ZRC1 276 aa19.28■□□□□ 0.68
CLN3-243ENST00000635973 TPRG1Q6ZUI0 275 aa19.28■□□□□ 0.68
CLN3-243ENST00000635973 LRRTM3Q86VH5 581 aa19.28■□□□□ 0.68
CLN3-243ENST00000635973 FAM200AQ8TCP9 573 aa19.28■□□□□ 0.68
CLN3-243ENST00000635973 SPPL2BQ8TCT7 592 aa19.28■□□□□ 0.68
CLN3-243ENST00000635973 SMARCD2Q92925 531 aa19.28■□□□□ 0.68
CLN3-243ENST00000635973 TATDN2Q93075 761 aa19.28■□□□□ 0.68
CLN3-243ENST00000635973 FAXDC2Q96IV6 333 aa19.28■□□□□ 0.68
CLN3-243ENST00000635973 TNIP3Q96KP6 325 aa19.28■□□□□ 0.68
CLN3-243ENST00000635973 NELL2Q99435 816 aa19.28■□□□□ 0.68
CLN3-243ENST00000635973 TRMT61BQ9BVS5 477 aaKnown RBP19.28■□□□□ 0.68
CLN3-243ENST00000635973 INTS2Q9H0H0 1204 aaKnown RBP19.28■□□□□ 0.68
CLN3-243ENST00000635973 DPEP3Q9H4B8 488 aa19.28■□□□□ 0.68
CLN3-243ENST00000635973 SPATA6Q9NWH7 488 aaPredicted RBP19.28■□□□□ 0.68
CLN3-243ENST00000635973 TAB2Q9NYJ8 693 aa19.28■□□□□ 0.68
CLN3-243ENST00000635973 SLC27A5Q9Y2P5 690 aa19.28■□□□□ 0.68
CLN3-243ENST00000635973 MYBPHLA2RUH7 354 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 ATP2C2O75185 946 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 GJA1P17302 382 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 TBXAS1P24557 533 aaPredicted RBP19.27■□□□□ 0.68
CLN3-243ENST00000635973 CCR2P41597 374 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 NDST1P52848 882 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 YWHAEP62258 255 aaKnown RBP19.27■□□□□ 0.68
CLN3-243ENST00000635973 CYP27A1Q02318 531 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 CUL2Q13617 745 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 GRM2Q14416 872 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 MDH1BQ5I0G3 518 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 ZNF852Q6ZMS4 543 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 GBP6Q6ZN66 633 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 PPM1KQ8N3J5 372 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 TTC39CQ8N584 583 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 B3GALNT2Q8NCR0 500 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 DNASE1L2Q92874 299 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 IRF7Q92985 503 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 MYLPFQ96A32 169 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 ASB16Q96NS5 453 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 CRACR2AQ9BSW2 395 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 OSBPL6Q9BZF3 934 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 NDST4Q9H3R1 872 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 SEMA4AQ9H3S1 761 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 CRTAC1Q9NQ79 661 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 TMLHEQ9NVH6 421 aa19.27■□□□□ 0.68
CLN3-243ENST00000635973 VNN2O95498 520 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 PSMC3P17980 439 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 PTPN1P18031 435 aaKnown RBP19.26■□□□□ 0.67
CLN3-243ENST00000635973 CD72P21854 359 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 EPHA5P54756 1037 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 ORC1Q13415 861 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms