RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 APOC2P02655 101 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 CD19P15391 556 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 CCND1P24385 295 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 DYNLT1P63172 113 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 TFDP1Q14186 410 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 LY6KQ17RY6 165 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 PARP6Q2NL67 630 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 SMTNL2Q2TAL5 461 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 TREML2Q5T2D2 321 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 CAPN12Q6ZSI9 719 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 LRRC71Q8N4P6 559 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 RSAD2Q8WXG1 361 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 TBC1D31Q96DN5 1066 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 MCRS1Q96EZ8 462 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 TRIM33Q9UPN9 1127 aa13.39□□□□□ -0.27
LINC00540-203ENST00000631321 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.38□□□□□ -0.27
LINC00540-203ENST00000631321 GOLGA8MH3BSY2 632 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 ERBB2P04626 1255 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 KCNT1Q5JUK3 1230 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 HHATQ5VTY9 493 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 SLC4A11Q8NBS3 891 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 GIMAP7Q8NHV1 300 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 ZNF398Q8TD17 642 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 TRPM4Q8TD43 1214 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 ZNF75CPQ92670 426 aaPredicted RBP13.38□□□□□ -0.27
LINC00540-203ENST00000631321 RAB3IPQ96QF0 476 aaPredicted RBP13.38□□□□□ -0.27
LINC00540-203ENST00000631321 PAFAH2Q99487 392 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 SPATC1LQ9H0A9 340 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 SDCBP2Q9H190 292 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 NXF1Q9UBU9 619 aaKnown RBP13.38□□□□□ -0.27
LINC00540-203ENST00000631321 TNFSF13BQ9Y275 285 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 SOCS7O14512 581 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 PEX10O60683 326 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 TMEM63AO94886 807 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 ARIH2O95376 493 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 TRUB2O95900 331 aaKnown RBP13.38□□□□□ -0.27
LINC00540-203ENST00000631321 CD48P09326 243 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 FGFR1P11362 822 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 KRT4P19013 534 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 ALDH3A1P30838 453 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 ELF1P32519 619 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 PSMC4P43686 418 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 RAP1GAPP47736 663 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 ZNF667Q5HYK9 610 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 CELF3Q5SZQ8 465 aaKnown RBP13.38□□□□□ -0.27
LINC00540-203ENST00000631321 EEF1DP3Q658K8 133 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 C3orf62Q6ZUJ4 267 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 RHPN2Q8IUC4 686 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 UNC45BQ8IWX7 931 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 ZNF276Q8N554 614 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 CXorf38Q8TB03 319 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 DCAKDQ8WVC6 231 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 ALKBH8Q96BT7 664 aaKnown RBP13.38□□□□□ -0.27
LINC00540-203ENST00000631321 ERP27Q96DN0 273 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 STAMBPL1Q96FJ0 436 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 TMEM237Q96Q45 408 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 LRRC37BQ96QE4 947 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 CDT1Q9H211 546 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 C10orf88Q9H8K7 445 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 VRTNQ9H8Y1 702 aa13.38□□□□□ -0.27
LINC00540-203ENST00000631321 METTL5Q9NRN9 209 aaKnown RBP13.38□□□□□ -0.27
LINC00540-203ENST00000631321 WDR90Q96KV7 1748 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 TCRBV7S3A2A0A539 114 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 TM9SF1O15321 606 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 ENDOD1O94919 500 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 MARK3P27448 753 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 MIPP30301 263 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 SSTR1P30872 391 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 PCK1P35558 622 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 MBTD1Q05BQ5 628 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 PTPN11Q06124 597 aaPredicted RBP13.37□□□□□ -0.27
LINC00540-203ENST00000631321 EFTUD2Q15029 972 aaKnown RBP eCLIP13.37□□□□□ -0.27
LINC00540-203ENST00000631321 ACCSLQ4AC99 568 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 LVRNQ6Q4G3 990 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 AGGF1Q8N302 714 aaeCLIP13.37□□□□□ -0.274e-7■■■■■ 65.7
LINC00540-203ENST00000631321 CEP120Q8N960 986 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 C1orf127Q8N9H9 656 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 FBXO36Q8NEA4 188 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 INPP5DQ92835 1189 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 UTP4Q969X6 686 aaKnown RBP13.37□□□□□ -0.27
LINC00540-203ENST00000631321 CXorf56Q9H5V9 222 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 RPF1Q9H9Y2 349 aaKnown RBP13.37□□□□□ -0.27
LINC00540-203ENST00000631321 ETNK1Q9HBU6 452 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 GGA3Q9NZ52 723 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 B4GALT5O43286 388 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 CILPO75339 1184 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 USP2O75604 605 aaPredicted RBP13.37□□□□□ -0.27
LINC00540-203ENST00000631321 EIF3EP60228 445 aaKnown RBP13.37□□□□□ -0.27
LINC00540-203ENST00000631321 RNASELQ05823 741 aaKnown RBP13.37□□□□□ -0.27
LINC00540-203ENST00000631321 OTOAQ7RTW8 1153 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 TRIM50Q86XT4 487 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 RFX6Q8HWS3 928 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 PDIK1LQ8N165 341 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 EMC1Q8N766 993 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 BANPQ8N9N5 519 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 KCTD6Q8NC69 237 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 TWNKQ96RR1 684 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 NFKBIZQ9BYH8 718 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 ELOVL4Q9GZR5 314 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 RSAD1Q9HA92 442 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms