RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 DLG3Q92796 817 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 NAF1Q96HR8 494 aaKnown RBP5.25□□□□□ -1.57
LINC00540-201ENST00000611481 CFAP53Q96M91 514 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 IDI2Q9BXS1 227 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 TRIM55Q9BYV6 548 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 RIOX1Q9H6W3 641 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 CNNM1Q9NRU3 951 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 SIRPGQ9P1W8 387 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 BCCIPQ9P287 314 aaKnown RBP eCLIP5.25□□□□□ -1.57
LINC00540-201ENST00000611481 PTGFRNQ9P2B2 879 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 TRPS1Q9UHF7 1281 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 ZNHIT2Q9UHR6 403 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 ZNF236Q9UL36 1845 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 PTPRSQ13332 1948 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 CEP295Q9C0D2 2601 aa5.25□□□□□ -1.57
LINC00540-201ENST00000611481 COL4A3Q01955 1670 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 IGF2RP11717 2491 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 BPTFQ12830 3046 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 CDK5RAP2Q96SN8 1893 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 LINC01565O15544 149 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 PPFIA4O75335 1185 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 PEX14O75381 377 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 IGKV5-2P06315 115 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 CSF1RP07333 972 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 ARP10275 920 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 CST5P28325 142 aaPredicted RBP5.24□□□□□ -1.57
LINC00540-201ENST00000611481 ZEB1P37275 1124 aaPredicted RBP5.24□□□□□ -1.57
LINC00540-201ENST00000611481 ADAM8P78325 824 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 DEFB103AP81534 67 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 ALDH6A1Q02252 535 aaKnown RBP5.24□□□□□ -1.57
LINC00540-201ENST00000611481 HYAL1Q12794 435 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 IFIT5Q13325 482 aaKnown RBP5.24□□□□□ -1.57
LINC00540-201ENST00000611481 GPM6BQ13491 265 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 UBE4AQ14139 1066 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 TMEM132BQ14DG7 1078 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 LY6G5CQ5SRR4 150 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 CATSPEREQ5SY80 951 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 FKBP15Q5T1M5 1219 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 FOXB2Q5VYV0 432 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 FSTL4Q6MZW2 842 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 HTR3DQ70Z44 454 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 PRIMA1Q86XR5 153 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 CCDC105Q8IYK2 499 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 PROKR1Q8TCW9 393 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 ZNF764Q96H86 408 aaPredicted RBP5.24□□□□□ -1.57
LINC00540-201ENST00000611481 MNTQ99583 582 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 RAD9AQ99638 391 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 FOXB1Q99853 325 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 PHF7Q9BWX1 381 aaPredicted RBP5.24□□□□□ -1.57
LINC00540-201ENST00000611481 MOV10L1Q9BXT6 1211 aaKnown RBP5.24□□□□□ -1.57
LINC00540-201ENST00000611481 SLKQ9H2G2 1235 aaPredicted RBP5.24□□□□□ -1.57
LINC00540-201ENST00000611481 DDX4Q9NQI0 724 aaKnown RBP5.24□□□□□ -1.57
LINC00540-201ENST00000611481 DDX56Q9NY93 547 aaKnown RBP5.24□□□□□ -1.57
LINC00540-201ENST00000611481 NCDNQ9UBB6 729 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 CNPY2Q9Y2B0 182 aa5.24□□□□□ -1.57
LINC00540-201ENST00000611481 FRYQ5TBA9 3013 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 ZNF462Q96JM2 2506 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 SLC12A8A0AV02 714 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 PI15O43692 258 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 MFAP3LO75121 409 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 HIP1RO75146 1068 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 DUSP11O75319 330 aaKnown RBP5.23□□□□□ -1.57
LINC00540-201ENST00000611481 EIF3JO75822 258 aaKnown RBP5.23□□□□□ -1.57
LINC00540-201ENST00000611481 BAIAP3O94812 1187 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 CSPG5O95196 566 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 GJB5O95377 273 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 S100BP04271 92 aaPredicted RBP5.23□□□□□ -1.57
LINC00540-201ENST00000611481 ITGB1P05556 798 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 CYP2C9P11712 490 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 NDUFV1P49821 464 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 CLCN5P51795 746 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 RRP1P56182 461 aaKnown RBP5.23□□□□□ -1.57
LINC00540-201ENST00000611481 WDR5P61964 334 aaKnown RBP5.23□□□□□ -1.57
LINC00540-201ENST00000611481 BEX3Q00994 111 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 SSRP1Q08945 709 aaKnown RBP5.23□□□□□ -1.57
LINC00540-201ENST00000611481 ITGA7Q13683 1181 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 EPC2Q52LR7 807 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 TAF7LQ5H9L4 462 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 CXCL17Q6UXB2 119 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 UNQ6494/PRO21346Q6UXR6 183 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 LDHAL6AQ6ZMR3 332 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 THAP3Q8WTV1 239 aaPredicted RBP5.23□□□□□ -1.57
LINC00540-201ENST00000611481 RIN2Q8WYP3 895 aaPredicted RBP5.23□□□□□ -1.57
LINC00540-201ENST00000611481 ERCC4Q92889 916 aaPredicted RBP5.23□□□□□ -1.57
LINC00540-201ENST00000611481 SRPK1Q96SB4 655 aaKnown RBP5.23□□□□□ -1.57
LINC00540-201ENST00000611481 MLST8Q9BVC4 326 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 CELF4Q9BZC1 486 aaKnown RBP5.23□□□□□ -1.57
LINC00540-201ENST00000611481 SMOC2Q9H3U7 446 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 TYW1Q9NV66 732 aaKnown RBP5.23□□□□□ -1.57
LINC00540-201ENST00000611481 ANKFY1Q9P2R3 1169 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 MAGEL2Q9UJ55 1249 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 RCAN3Q9UKA8 241 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 ZHX1Q9UKY1 873 aaPredicted RBP5.23□□□□□ -1.57
LINC00540-201ENST00000611481 USP18Q9UMW8 372 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 MAP3K2Q9Y2U5 619 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 ZZEF1O43149 2961 aa5.23□□□□□ -1.57
LINC00540-201ENST00000611481 MYO18BQ8IUG5 2567 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 SRRM3A6NNA2 597 aaPredicted RBP5.22□□□□□ -1.57
LINC00540-201ENST00000611481 H3BNC9 293 aa5.22□□□□□ -1.57
LINC00540-201ENST00000611481 PDPK1O15530 556 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms