RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	FBRSL1	Q9HCM7	1045 aa	Known RBP	18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	WNT6	Q9Y6F9	365 aa		18.82	■□□□□ 0.6
SHKBP1-223	ENST00000600552	C2orf78	A6NCI8	922 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	GABRD	O14764	452 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	AXIN1	O15169	862 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	CUTA	O60888	179 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	RET	P07949	1114 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	SDHB	P21912	280 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	TGM1	P22735	817 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	ANXA13	P27216	316 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	AFM	P43652	599 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	AMPD2	Q01433	879 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	IFRD2	Q12894	506 aa	Predicted RBP	18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	MTF1	Q14872	753 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	PDGFRL	Q15198	375 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	MDH1B	Q5I0G3	518 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	SHC4	Q6S5L8	630 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	TRAPPC11	Q7Z392	1133 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	SYNPO	Q8N3V7	929 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	FSIP1	Q8NA03	581 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	OR6B3	Q8NGW1	331 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	KBTBD7	Q8WVZ9	684 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	CRTAC1	Q9NQ79	661 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	KBTBD4	Q9NVX7	518 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	CDH9	Q9ULB4	789 aa		18.81	■□□□□ 0.6
SHKBP1-223	ENST00000600552	SPTBN2	O15020	2390 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	POLR2D	O15514	142 aa	Known RBP	18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	RNF40	O75150	1001 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	PPP6R2	O75170	966 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	HDC	P19113	662 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	GNL1	P36915	607 aa	Predicted RBP	18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	KCNB1	Q14721	858 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	CCDC6	Q16204	474 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	SNRNP35	Q16560	246 aa	Known RBP	18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	TMEM196	Q5HYL7	178 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	FAM171B	Q6P995	826 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	WDR49	Q8IV35	697 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	CPA6	Q8N4T0	437 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	FAM160A2	Q8N612	972 aa	Predicted RBP	18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	ZNF507	Q8TCN5	953 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	SH3RF2	Q8TEC5	729 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	TRMT2B	Q96GJ1	504 aa	Known RBP	18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	P2RY13	Q9BPV8	354 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	MRPL45	Q9BRJ2	306 aa	Known RBP	18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	CUEDC2	Q9H467	287 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	KIAA1586	Q9HCI6	787 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	SLC39A2	Q9NP94	309 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	AGPAT3	Q9NRZ7	376 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	SEMA4G	Q9NTN9	838 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	MORC2	Q9Y6X9	1032 aa	Predicted RBP	18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	CACNA1A	O00555	2505 aa		18.8	■□□□□ 0.6
SHKBP1-223	ENST00000600552	TRDMT1	O14717	391 aa	Known RBP	18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	ATG13	O75143	517 aa		18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	PHACTR2	O75167	634 aa		18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	CST3	P01034	146 aa	Predicted RBP	18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	CCDC192	P0DO97	292 aa		18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	CNR2	P34972	360 aa		18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	GJA4	P35212	333 aa		18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	ME1	P48163	572 aa		18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	TNNC1	P63316	161 aa		18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	FAM160A1	Q05DH4	1040 aa		18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	TRPC3	Q13507	836 aa		18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	CFAP221	Q4G0U5	840 aa		18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	DPH6	Q7L8W6	267 aa		18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	WDR5B	Q86VZ2	330 aa		18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	FUBP3	Q96I24	572 aa	Known RBP eCLIP	18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	C7orf25	Q9BPX7	421 aa		18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	LINC00597	Q9H2U6	94 aa		18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	ECT2	Q9H8V3	914 aa		18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	TRPM5	Q9NZQ8	1165 aa		18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	NXF1	Q9UBU9	619 aa	Known RBP	18.79	■□□□□ 0.6
SHKBP1-223	ENST00000600552	SCAMP3	O14828	347 aa	Known RBP	18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	EIF3D	O15371	548 aa	Known RBP eCLIP	18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	TGFB1I1	O43294	461 aa		18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	PAPSS2	O95340	614 aa	Predicted RBP	18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	YEATS4	O95619	227 aa		18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	WARS	P23381	471 aa	Known RBP	18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	MAGEA11	P43364	429 aa		18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	USP46	P62068	366 aa		18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	CYP24A1	Q07973	514 aa		18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	ZNF268	Q14587	947 aa	Predicted RBP	18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	WDR72	Q3MJ13	1102 aa		18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	EPM2AIP1	Q7L775	607 aa	Predicted RBP	18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	GRAMD1C	Q8IYS0	662 aa		18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	XXYLT1	Q8NBI6	393 aa		18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	SPATA18	Q8TC71	538 aa		18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	OSCP1	Q8WVF1	389 aa		18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	MYRFL	Q96LU7	910 aa		18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	HHIP	Q96QV1	700 aa		18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	FAM13B	Q9NYF5	915 aa		18.78	■□□□□ 0.6
SHKBP1-223	ENST00000600552	ANAPC1	Q9H1A4	1944 aa		18.77	■□□□□ 0.6
SHKBP1-223	ENST00000600552	SOBP	A7XYQ1	873 aa		18.77	■□□□□ 0.6
SHKBP1-223	ENST00000600552	GDF9	O60383	454 aa		18.77	■□□□□ 0.6
SHKBP1-223	ENST00000600552	RPP40	O75818	363 aa	Known RBP	18.77	■□□□□ 0.6
SHKBP1-223	ENST00000600552	MAPRE1	Q15691	268 aa	Known RBP	18.77	■□□□□ 0.6
SHKBP1-223	ENST00000600552	ZNF77	Q15935	545 aa		18.77	■□□□□ 0.6
SHKBP1-223	ENST00000600552	DENND5B	Q6ZUT9	1274 aa		18.77	■□□□□ 0.6
SHKBP1-223	ENST00000600552	UNC13D	Q70J99	1090 aa		18.77	■□□□□ 0.6
SHKBP1-223	ENST00000600552	RPLP0P6	Q8NHW5	317 aa		18.77	■□□□□ 0.6

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