RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 JAKMIP2Q96AA8 810 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 PPP1R9BQ96SB3 815 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 COLEC11Q9BWP8 271 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 STK33Q9BYT3 514 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 FOXQ1Q9C009 403 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 DNAI2Q9GZS0 605 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 NRDE2Q9H7Z3 1164 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 CYP3A43Q9HB55 503 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 ARHGEF3Q9NR81 526 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 ZNHIT6Q9NWK9 470 aaKnown RBP12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 ZSCAN32Q9NX65 697 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 DNAJB4Q9UDY4 337 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 POLIQ9UNA4 740 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 FAN1Q9Y2M0 1017 aa12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 PRG3Q9Y2Y8 225 aaPredicted RBP12.85□□□□□ -0.35
SHKBP1-213ENST00000597325 IGSF10Q6WRI0 2623 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 LRRC53A6NM62 1247 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 C1QTNF9BB2RNN3 333 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 TMEM189-UBE2V1I3L0A0 370 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 TRAPPC3O43617 180 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 B4GALT3O60512 393 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 KIF4AO95239 1232 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 ALDH2P05091 517 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 CCDC172P0C7W6 258 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 C1QTNF9P0C862 333 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 ODC1P11926 461 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 CD58P19256 250 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 USP8P40818 1118 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 ALDH7A1P49419 539 aaKnown RBP12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 ADKP55263 362 aaKnown RBP12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 BCAR1P56945 870 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 SPEM2Q0P670 501 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 ASIC2Q16515 512 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 SFMBT2Q5VUG0 894 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 SCARA3Q6AZY7 606 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 KCNT2Q6UVM3 1135 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 CCDC186Q7Z3E2 898 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 C3orf58Q8NDZ4 430 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 APPL2Q8NEU8 664 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 OR8K1Q8NGG5 319 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 HASPINQ8TF76 798 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 RABGGTAQ92696 567 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 KREMEN1Q96MU8 473 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 ZNF558Q96NG5 402 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 ARID3AQ99856 593 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 PAAF1Q9BRP4 392 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 NAA15Q9BXJ9 866 aaKnown RBP12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 BCO2Q9BYV7 579 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 FAM124BQ9H5Z6 455 aaPredicted RBP12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 SMYD3Q9H7B4 428 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 ABHD10Q9NUJ1 306 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 GDAP2Q9NXN4 497 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 AJAP1Q9UKB5 411 aaPredicted RBP12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 DOCK8Q8NF50 2099 aa12.84□□□□□ -0.35
SHKBP1-213ENST00000597325 CYB561D2O14569 222 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 NRP1O14786 923 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 LAMTOR5O43504 91 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 TADA2AO75478 443 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 SOX5P35711 763 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 PBX3P40426 434 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 RAP1GAPP47736 663 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 SLC11A1P49279 550 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 JAM2P57087 298 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 STARD6P59095 220 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 CSTF1Q05048 431 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 METTL23Q86XA0 190 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 ADGRF2Q8IZF7 708 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 TOP6BLQ8N6T0 577 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 SLC22A17Q8WUG5 538 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 DDX1Q92499 740 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 SHC3Q92529 594 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 BAP1Q92560 729 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 KAT5Q92993 513 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 SENP8Q96LD8 212 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 PANX2Q96RD6 677 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 DNAJC7Q99615 494 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 SNX25Q9H3E2 840 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 CISHQ9NSE2 258 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 GMEB2Q9UKD1 530 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 ADAM28Q9UKQ2 775 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 DSEQ9UL01 958 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 PCDHB4Q9Y5E5 795 aa12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 SF3B1O75533 1304 aaKnown RBP eCLIP12.83□□□□□ -0.36
SHKBP1-213ENST00000597325 CELSR3Q9NYQ7 3312 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 NAV2Q8IVL1 2488 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 GDF9O60383 454 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 LRP3O75074 770 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 GFPT2O94808 682 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 ZIC2O95409 532 aaPredicted RBP12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 GALTP07902 379 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 FERP16591 822 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 PPM1AP35813 382 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 AARSP49588 968 aaKnown RBP eCLIP12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 ARID5AQ03989 594 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 KRT17Q04695 432 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 GOLGA8FQ08AF8 430 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 GOLGA8DPQ0D2H9 430 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 ELAVL2Q12926 359 aaKnown RBP12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 TDRD12Q587J7 1177 aaKnown RBP12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 SMYD5Q6GMV2 418 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms