RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 FOXN3O00409 490 aaPredicted RBP5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 MYL3P08590 195 aa5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 KCNA3P22001 575 aa5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 CXCR5P32302 372 aa5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 HMGA2P52926 109 aa5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 SP2Q02086 613 aa5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 IFIT5Q13325 482 aaKnown RBP5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 ZNF169Q14929 603 aaPredicted RBP5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 TXNRD1Q16881 649 aa5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 INSCQ1MX18 579 aa5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 MAP9Q49MG5 647 aa5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 UNC13DQ70J99 1090 aa5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 DTX2Q86UW9 622 aa5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 SLC15A3Q8IY34 581 aa5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 YAF2Q8IY57 180 aa5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 BPIFB1Q8TDL5 484 aa5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 PPP2R3CQ969Q6 453 aa5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 ALG8Q9BVK2 526 aa5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 CHST8Q9H2A9 424 aa5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 CXorf36Q9H7Y0 433 aa5.55□□□□□ -1.52
SMCHD1-204ENST00000581226 CCDC151A5D8V7 595 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 KPNA5O15131 536 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 ORC4O43929 436 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 IL18RAPO95256 599 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 NR2F6P10588 404 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 TXNP10599 105 aaKnown RBP5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 PICALMQ13492 652 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 DAG1Q14118 895 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 ERCC6LQ2NKX8 1250 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 IL31Q6EBC2 164 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 PCSK4Q6UW60 755 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 OLFML1Q6UWY5 402 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 C11orf96Q7Z7L8 435 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 PEG10Q86TG7 708 aaKnown RBP5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 ATRIPQ8WXE1 791 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 ATG4AQ8WYN0 398 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 PBKQ96KB5 322 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 SNX22Q96L94 193 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 AGAP2Q99490 1192 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 BRIP1Q9BX63 1249 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 EHD3Q9NZN3 535 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 FOXJ2Q9P0K8 574 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 DKK3Q9UBP4 350 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 MID2Q9UJV3 735 aa5.54□□□□□ -1.52
SMCHD1-204ENST00000581226 WDR27A2RRH5 827 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 H7C4K7 107 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 RAB27BO00194 218 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 SLC16A3O15427 465 aaKnown RBP5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 TLR5O60602 858 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 RASAL1O95294 804 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 MT-ND5P03915 603 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 CSF1RP07333 972 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 PARP1P09874 1014 aaKnown RBP5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 IL1R1P14778 569 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 TYRP1P17643 537 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 GRIA3P42263 894 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 CARSP49589 748 aaKnown RBP5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 PRIM2P49643 509 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 RARRES1P49788 294 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 PDE6CP51160 858 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 MAPK10P53779 464 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 SIM1P81133 766 aaPredicted RBP5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 ZNF543Q08ER8 600 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 ARHGEF7Q14155 803 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 SLC29A2Q14542 456 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 PTCHD3Q3KNS1 767 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 TEDDM1Q5T9Z0 273 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 DEPDC1Q5TB30 811 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 CACHD1Q5VU97 1274 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 MAVSQ7Z434 540 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 CCDC146Q8IYE0 955 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 SPARTQ8N0X7 666 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 CAGE1Q8TC20 777 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 IPCEF1Q8WWN9 437 aaPredicted RBP5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 RFKQ969G6 155 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 PDLIM2Q96JY6 352 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 GBA2Q9HCG7 927 aaPredicted RBP5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 TBC1D23Q9NUY8 699 aa5.53□□□□□ -1.52
SMCHD1-204ENST00000581226 POM121BA6NF01 834 aa5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 CCP110O43303 1012 aa5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 RGS10O43665 173 aa5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 PLIN1O60240 522 aa5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 ZFXP17010 805 aaPredicted RBP5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 ACVR2AP27037 513 aa5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 ADORA2AP29274 412 aa5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 PTDSS1P48651 473 aaKnown RBP5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 CASP5P51878 434 aa5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 NEK3P51956 506 aa5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 ITGA8P53708 1063 aa5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 BMPR2Q13873 1038 aa5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 PLAC9Q5JTB6 97 aa5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 TREML2Q5T2D2 321 aa5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 ZNF618Q5T7W0 954 aa5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 RNF44Q7L0R7 432 aa5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 KCTD20Q7Z5Y7 419 aa5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 LIX1LQ8IVB5 337 aa5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 SDR16C5Q8N3Y7 309 aa5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 CCDC33Q8N5R6 958 aa5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 SMCR8Q8TEV9 937 aaPredicted RBP5.52□□□□□ -1.53
SMCHD1-204ENST00000581226 PARD3BQ8TEW8 1205 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms