RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 DGKEP52429 567 aa7.77□□□□□ -1.17
SS18-214ENST00000580003 PRKAG1P54619 331 aa7.77□□□□□ -1.17
SS18-214ENST00000580003 C3orf38Q5JPI3 329 aa7.77□□□□□ -1.17
SS18-214ENST00000580003 ZNF551Q7Z340 670 aaPredicted RBP7.77□□□□□ -1.17
SS18-214ENST00000580003 MICU3Q86XE3 530 aa7.77□□□□□ -1.17
SS18-214ENST00000580003 ATG4AQ8WYN0 398 aa7.77□□□□□ -1.17
SS18-214ENST00000580003 SPSB4Q96A44 273 aa7.77□□□□□ -1.17
SS18-214ENST00000580003 HAPLN3Q96S86 360 aa7.77□□□□□ -1.17
SS18-214ENST00000580003 PPP1R9BQ96SB3 815 aa7.77□□□□□ -1.17
SS18-214ENST00000580003 NUP62CLQ9H1M0 184 aa7.77□□□□□ -1.17
SS18-214ENST00000580003 GLOD4Q9HC38 313 aa7.77□□□□□ -1.17
SS18-214ENST00000580003 ARHGEF3Q9NR81 526 aa7.77□□□□□ -1.17
SS18-214ENST00000580003 ST3GAL5Q9UNP4 418 aa7.77□□□□□ -1.17
SS18-214ENST00000580003 GCOM1H8Y6P7 765 aaPredicted RBP7.76□□□□□ -1.17
SS18-214ENST00000580003 PYCARD-AS1I3L0S3 204 aa7.76□□□□□ -1.17
SS18-214ENST00000580003 RASSF9O75901 435 aa7.76□□□□□ -1.17
SS18-214ENST00000580003 NDUFB7P17568 137 aa7.76□□□□□ -1.17
SS18-214ENST00000580003 RPL17P18621 184 aaKnown RBP7.76□□□□□ -1.17
SS18-214ENST00000580003 KLRC1P26715 233 aa7.76□□□□□ -1.17
SS18-214ENST00000580003 PDE6CP51160 858 aa7.76□□□□□ -1.17
SS18-214ENST00000580003 ELLP55199 621 aaPredicted RBP7.76□□□□□ -1.17
SS18-214ENST00000580003 NANOS3P60323 173 aaKnown RBP7.76□□□□□ -1.17
SS18-214ENST00000580003 ZIK1Q3SY52 487 aaPredicted RBP7.76□□□□□ -1.17
SS18-214ENST00000580003 HSP90AB2PQ58FF8 381 aa7.76□□□□□ -1.17
SS18-214ENST00000580003 CYB5RLQ6IPT4 315 aa7.76□□□□□ -1.17
SS18-214ENST00000580003 ARHGEF25Q86VW2 580 aa7.76□□□□□ -1.17
SS18-214ENST00000580003 ADGRG3Q86Y34 549 aa7.76□□□□□ -1.17
SS18-214ENST00000580003 OR56A3Q8NH54 315 aa7.76□□□□□ -1.17
SS18-214ENST00000580003 BPIFB1Q8TDL5 484 aa7.76□□□□□ -1.17
SS18-214ENST00000580003 UROC1Q96N76 676 aa7.76□□□□□ -1.17
SS18-214ENST00000580003 STK31Q9BXU1 1019 aa7.76□□□□□ -1.17
SS18-214ENST00000580003 CXorf36Q9H7Y0 433 aa7.76□□□□□ -1.17
SS18-214ENST00000580003 IL17RBQ9NRM6 502 aa7.76□□□□□ -1.17
SS18-214ENST00000580003 ENTPD2Q9Y5L3 495 aa7.76□□□□□ -1.17
SS18-214ENST00000580003 ONECUT2O95948 504 aa7.75□□□□□ -1.17
SS18-214ENST00000580003 EBLN1P0CF75 366 aa7.75□□□□□ -1.17
SS18-214ENST00000580003 PTH2RP49190 550 aa7.75□□□□□ -1.17
SS18-214ENST00000580003 INSCQ1MX18 579 aa7.75□□□□□ -1.17
SS18-214ENST00000580003 TREML2Q5T2D2 321 aa7.75□□□□□ -1.17
SS18-214ENST00000580003 TSTD2Q5T7W7 516 aa7.75□□□□□ -1.17
SS18-214ENST00000580003 FBXO42Q6P3S6 717 aa7.75□□□□□ -1.17
SS18-214ENST00000580003 MAVSQ7Z434 540 aa7.75□□□□□ -1.17
SS18-214ENST00000580003 BOLLQ8N9W6 283 aaKnown RBP7.75□□□□□ -1.17
SS18-214ENST00000580003 NELL1Q92832 810 aa7.75□□□□□ -1.17
SS18-214ENST00000580003 PPP2R3CQ969Q6 453 aa7.75□□□□□ -1.17
SS18-214ENST00000580003 BTBD1Q9H0C5 482 aa7.75□□□□□ -1.17
SS18-214ENST00000580003 KLK15Q9H2R5 256 aa7.75□□□□□ -1.17
SS18-214ENST00000580003 CPNE5Q9HCH3 593 aa7.75□□□□□ -1.17
SS18-214ENST00000580003 TRMT13Q9NUP7 481 aaKnown RBP7.75□□□□□ -1.17
SS18-214ENST00000580003 ASB6Q9NWX5 421 aa7.75□□□□□ -1.17
SS18-214ENST00000580003 HDAC9Q9UKV0 1011 aa7.75□□□□□ -1.17
SS18-214ENST00000580003 ELFN1P0C7U0 828 aa7.74□□□□□ -1.17
SS18-214ENST00000580003 KCNA3P22001 575 aa7.74□□□□□ -1.17
SS18-214ENST00000580003 CLCN2P51788 898 aa7.74□□□□□ -1.17
SS18-214ENST00000580003 RPS16P62249 146 aaKnown RBP7.74□□□□□ -1.17
SS18-214ENST00000580003 SP2Q02086 613 aa7.74□□□□□ -1.17
SS18-214ENST00000580003 DEPDC1Q5TB30 811 aa7.74□□□□□ -1.17
SS18-214ENST00000580003 RD3Q7Z3Z2 195 aa7.74□□□□□ -1.17
SS18-214ENST00000580003 CCAR1Q8IX12 1150 aaKnown RBP7.74□□□□□ -1.17
SS18-214ENST00000580003 SPARTQ8N0X7 666 aa7.74□□□□□ -1.17
SS18-214ENST00000580003 OSCP1Q8WVF1 389 aa7.74□□□□□ -1.17
SS18-214ENST00000580003 GLG1Q92896 1179 aa7.74□□□□□ -1.17
SS18-214ENST00000580003 XPNPEP3Q9NQH7 507 aa7.74□□□□□ -1.17
SS18-214ENST00000580003 DDX21Q9NR30 783 aaKnown RBP eCLIP7.74□□□□□ -1.17
SS18-214ENST00000580003 SEMA4GQ9NTN9 838 aa7.74□□□□□ -1.17
SS18-214ENST00000580003 SERTAD4Q9NUC0 356 aa7.74□□□□□ -1.17
SS18-214ENST00000580003 GEMIN8Q9NWZ8 242 aaKnown RBP7.74□□□□□ -1.17
SS18-214ENST00000580003 COL20A1Q9P218 1284 aa7.74□□□□□ -1.17
SS18-214ENST00000580003 SH2B3Q9UQQ2 575 aa7.74□□□□□ -1.17
SS18-214ENST00000580003 SNX13Q9Y5W8 968 aa7.74□□□□□ -1.17
SS18-214ENST00000580003 SPATA31A6Q5VVP1 1343 aa7.74□□□□□ -1.17
SS18-214ENST00000580003 LOC102723971A0A1B0GUV8 181 aa7.73□□□□□ -1.17
SS18-214ENST00000580003 A1L4Q6 167 aa7.73□□□□□ -1.17
SS18-214ENST00000580003 PQBP1O60828 265 aaKnown RBP7.73□□□□□ -1.17
SS18-214ENST00000580003 GPD1P21695 349 aa7.73□□□□□ -1.17
SS18-214ENST00000580003 CCT8P50990 548 aa7.73□□□□□ -1.17
SS18-214ENST00000580003 PDE1AP54750 535 aa7.73□□□□□ -1.17
SS18-214ENST00000580003 SOX10P56693 466 aa7.73□□□□□ -1.17
SS18-214ENST00000580003 ZNF362Q5T0B9 420 aaPredicted RBP7.73□□□□□ -1.17
SS18-214ENST00000580003 SESTD1Q86VW0 696 aa7.73□□□□□ -1.17
SS18-214ENST00000580003 PRIMA1Q86XR5 153 aa7.73□□□□□ -1.17
SS18-214ENST00000580003 RASAL3Q86YV0 1011 aa7.73□□□□□ -1.17
SS18-214ENST00000580003 TIMP4Q99727 224 aa7.73□□□□□ -1.17
SS18-214ENST00000580003 APOL5Q9BWW9 433 aa7.73□□□□□ -1.17
SS18-214ENST00000580003 CCNL1Q9UK58 526 aaPredicted RBP7.73□□□□□ -1.17
SS18-214ENST00000580003 TBC1D30Q9Y2I9 924 aa7.73□□□□□ -1.17
SS18-214ENST00000580003 FESP07332 822 aa7.72□□□□□ -1.17
SS18-214ENST00000580003 CSF1RP07333 972 aa7.72□□□□□ -1.17
SS18-214ENST00000580003 IL6RP08887 468 aaPredicted RBP7.72□□□□□ -1.17
SS18-214ENST00000580003 ADORA2AP29274 412 aa7.72□□□□□ -1.17
SS18-214ENST00000580003 LIPAP38571 399 aa7.72□□□□□ -1.17
SS18-214ENST00000580003 ATXN1P54253 815 aaKnown RBP7.72□□□□□ -1.17
SS18-214ENST00000580003 HLTFQ14527 1009 aaKnown RBP eCLIP7.72□□□□□ -1.17
SS18-214ENST00000580003 ZDHHC24Q6UX98 284 aa7.72□□□□□ -1.17
SS18-214ENST00000580003 LRRC71Q8N4P6 559 aa7.72□□□□□ -1.17
SS18-214ENST00000580003 IPCEF1Q8WWN9 437 aaPredicted RBP7.72□□□□□ -1.17
SS18-214ENST00000580003 R3HDM4Q96D70 268 aa7.72□□□□□ -1.17
SS18-214ENST00000580003 ITGB1BP2Q9UKP3 347 aa7.72□□□□□ -1.17
SS18-214ENST00000580003 QSOX1O00391 747 aa7.71□□□□□ -1.18
SS18-214ENST00000580003 FOXN3O00409 490 aaPredicted RBP7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms