RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 ZNF785A8K8V0 405 aa5.07□□□□□ -1.6
NUP88-202ENST00000570937 OVOL3O00110 214 aa5.07□□□□□ -1.6
NUP88-202ENST00000570937 ALDH2P05091 517 aa5.07□□□□□ -1.6
NUP88-202ENST00000570937 HSPA6P17066 643 aa5.07□□□□□ -1.6
NUP88-202ENST00000570937 GATA3P23771 443 aa5.07□□□□□ -1.6
NUP88-202ENST00000570937 ZNF135P52742 658 aaPredicted RBP5.07□□□□□ -1.6
NUP88-202ENST00000570937 PSMC1P62191 440 aaKnown RBP5.07□□□□□ -1.6
NUP88-202ENST00000570937 ZNF267Q14586 743 aaPredicted RBP5.07□□□□□ -1.6
NUP88-202ENST00000570937 PLS1Q14651 629 aa5.07□□□□□ -1.6
NUP88-202ENST00000570937 PRR16Q569H4 304 aa5.07□□□□□ -1.6
NUP88-202ENST00000570937 VWA1Q6PCB0 445 aa5.07□□□□□ -1.6
NUP88-202ENST00000570937 PPP1R32Q7Z5V6 425 aa5.07□□□□□ -1.6
NUP88-202ENST00000570937 GRAMD1CQ8IYS0 662 aa5.07□□□□□ -1.6
NUP88-202ENST00000570937 ADGRG5Q8IZF4 528 aa5.07□□□□□ -1.6
NUP88-202ENST00000570937 NSUN7Q8NE18 718 aaKnown RBP5.07□□□□□ -1.6
NUP88-202ENST00000570937 TMEM125Q96AQ2 219 aa5.07□□□□□ -1.6
NUP88-202ENST00000570937 CGRRF1Q99675 332 aa5.07□□□□□ -1.6
NUP88-202ENST00000570937 CNPPD1Q9BV87 410 aa5.07□□□□□ -1.6
NUP88-202ENST00000570937 NMRK2Q9NPI5 230 aa5.07□□□□□ -1.6
NUP88-202ENST00000570937 RGS17Q9UGC6 210 aaPredicted RBP5.07□□□□□ -1.6
NUP88-202ENST00000570937 TRPC5Q9UL62 973 aaPredicted RBP5.07□□□□□ -1.6
NUP88-202ENST00000570937 STXBP5LQ9Y2K9 1186 aa5.07□□□□□ -1.6
NUP88-202ENST00000570937 ATP7BP35670 1465 aa5.07□□□□□ -1.6
NUP88-202ENST00000570937 USP47Q96K76 1375 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 NINLQ9Y2I6 1382 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 SALL3Q9BXA9 1300 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 H3BML4 177 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 H3BUI4 141 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 POLRMTO00411 1230 aaKnown RBP5.06□□□□□ -1.6
NUP88-202ENST00000570937 AP1G1O43747 822 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 SOAT2O75908 522 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 FOLR3P41439 243 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 RBM6P78332 1123 aaKnown RBP5.06□□□□□ -1.6
NUP88-202ENST00000570937 MC2RQ01718 297 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 ZNF169Q14929 603 aaPredicted RBP5.06□□□□□ -1.6
NUP88-202ENST00000570937 SF3B3Q15393 1217 aaKnown RBP5.06□□□□□ -1.6
NUP88-202ENST00000570937 NFE2Q16621 373 aaPredicted RBP5.06□□□□□ -1.6
NUP88-202ENST00000570937 CD300EQ496F6 205 aaPredicted RBP5.06□□□□□ -1.6
NUP88-202ENST00000570937 EPM2AIP1Q7L775 607 aaPredicted RBP5.06□□□□□ -1.6
NUP88-202ENST00000570937 UNC5CLQ8IV45 518 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 TPH2Q8IWU9 490 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 KCNH5Q8NCM2 988 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 SLC35G2Q8TBE7 412 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 BRIX1Q8TDN6 353 aaKnown RBP5.06□□□□□ -1.6
NUP88-202ENST00000570937 SNX19Q92543 992 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 TNPO1Q92973 898 aaKnown RBP5.06□□□□□ -1.6
NUP88-202ENST00000570937 SLC35A4Q96G79 324 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 TINAGL1Q9GZM7 467 aaPredicted RBP5.06□□□□□ -1.6
NUP88-202ENST00000570937 FOXJ2Q9P0K8 574 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 AGAP1Q9UPQ3 857 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 PCDHA1Q9Y5I3 950 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 ITSN1Q15811 1721 aa5.06□□□□□ -1.6
NUP88-202ENST00000570937 QRICH2Q9H0J4 1663 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 KTN1Q86UP2 1357 aaKnown RBP5.05□□□□□ -1.6
NUP88-202ENST00000570937 LRP6O75581 1613 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 TTC21AQ8NDW8 1320 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 A0A088AWK7 358 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 TOR1BO14657 336 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 GNAI2P04899 355 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 U2AF1L5P0DN76 240 aaPredicted RBP5.05□□□□□ -1.6
NUP88-202ENST00000570937 BMP5P22003 454 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 U2AF1Q01081 240 aaKnown RBP eCLIP5.05□□□□□ -1.6
NUP88-202ENST00000570937 ERCC6LQ2NKX8 1250 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 CCDC157Q569K6 752 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 CXorf57Q6NSI4 855 aaKnown RBP5.05□□□□□ -1.6
NUP88-202ENST00000570937 USP37Q86T82 979 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 PRIMA1Q86XR5 153 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 DENND1CQ8IV53 801 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 RAVER1Q8IY67 606 aaKnown RBP5.05□□□□□ -1.6
NUP88-202ENST00000570937 SH2D3CQ8N5H7 860 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 KLHDC4Q8TBB5 520 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 ZG16BQ96DA0 208 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 MTFMTQ96DP5 389 aaKnown RBP5.05□□□□□ -1.6
NUP88-202ENST00000570937 PDLIM2Q96JY6 352 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 TAAR9Q96RI9 348 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 TESK2Q96S53 571 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 OSBPL9Q96SU4 736 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 SLAMF7Q9NQ25 335 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 PRDM11Q9NQV5 511 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.05□□□□□ -1.6
NUP88-202ENST00000570937 GABBR1Q9UBS5 961 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 USP32Q8NFA0 1604 aa5.05□□□□□ -1.6
NUP88-202ENST00000570937 COL22A1Q8NFW1 1626 aaPredicted RBP5.05□□□□□ -1.6
NUP88-202ENST00000570937 RGPD8O14715 1765 aaPredicted RBP5.04□□□□□ -1.6
NUP88-202ENST00000570937 ZAR1LA6NP61 321 aa5.04□□□□□ -1.6
NUP88-202ENST00000570937 MPPED1O15442 326 aa5.04□□□□□ -1.6
NUP88-202ENST00000570937 PEX1O43933 1283 aa5.04□□□□□ -1.6
NUP88-202ENST00000570937 AHSGP02765 367 aa5.04□□□□□ -1.6
NUP88-202ENST00000570937 S100BP04271 92 aaPredicted RBP5.04□□□□□ -1.6
NUP88-202ENST00000570937 CXCR5P32302 372 aa5.04□□□□□ -1.6
NUP88-202ENST00000570937 PHKA1P46020 1223 aa5.04□□□□□ -1.6
NUP88-202ENST00000570937 NPTX2P47972 431 aa5.04□□□□□ -1.6
NUP88-202ENST00000570937 CLK3P49761 638 aaKnown RBP5.04□□□□□ -1.6
NUP88-202ENST00000570937 RARRES1P49788 294 aa5.04□□□□□ -1.6
NUP88-202ENST00000570937 TOB1P50616 345 aaPredicted RBP5.04□□□□□ -1.6
NUP88-202ENST00000570937 SIM1P81133 766 aaPredicted RBP5.04□□□□□ -1.6
NUP88-202ENST00000570937 PTPRRQ15256 657 aa5.04□□□□□ -1.6
NUP88-202ENST00000570937 PREPLQ4J6C6 727 aaPredicted RBP5.04□□□□□ -1.6
NUP88-202ENST00000570937 ANKRD13AQ8IZ07 590 aa5.04□□□□□ -1.6
NUP88-202ENST00000570937 PSD4Q8NDX1 1056 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms