RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 GRIK2Q13002 908 aa19.52■□□□□ 0.72
CLK3-227ENST00000570296 SEZ6Q53EL9 994 aa19.52■□□□□ 0.72
CLK3-227ENST00000570296 TRIML1Q8N9V2 468 aa19.52■□□□□ 0.72
CLK3-227ENST00000570296 SPRYD3Q8NCJ5 442 aa19.52■□□□□ 0.72
CLK3-227ENST00000570296 ERMNQ8TAM6 284 aa19.52■□□□□ 0.72
CLK3-227ENST00000570296 SPATA18Q8TC71 538 aa19.52■□□□□ 0.72
CLK3-227ENST00000570296 SETD7Q8WTS6 366 aaKnown RBP19.52■□□□□ 0.72
CLK3-227ENST00000570296 ZNF274Q96GC6 653 aaPredicted RBP19.52■□□□□ 0.72
CLK3-227ENST00000570296 ZBTB45Q96K62 511 aaPredicted RBP19.52■□□□□ 0.72
CLK3-227ENST00000570296 HSPA12BQ96MM6 686 aa19.52■□□□□ 0.72
CLK3-227ENST00000570296 PNMA5Q96PV4 448 aa19.52■□□□□ 0.72
CLK3-227ENST00000570296 SLC22A12Q96S37 553 aa19.52■□□□□ 0.72
CLK3-227ENST00000570296 CYP2S1Q96SQ9 504 aa19.52■□□□□ 0.72
CLK3-227ENST00000570296 CDC6Q99741 560 aa19.52■□□□□ 0.72
CLK3-227ENST00000570296 TRPC7Q9HCX4 862 aa19.52■□□□□ 0.72
CLK3-227ENST00000570296 ABI2Q9NYB9 513 aaPredicted RBP19.52■□□□□ 0.72
CLK3-227ENST00000570296 MAGED2Q9UNF1 606 aaPredicted RBP19.52■□□□□ 0.72
CLK3-227ENST00000570296 RBM19Q9Y4C8 960 aaKnown RBP19.52■□□□□ 0.72
CLK3-227ENST00000570296 CABIN1Q9Y6J0 2220 aa19.52■□□□□ 0.71
CLK3-227ENST00000570296 A0A0A0MRY4 1105 aa19.51■□□□□ 0.71
CLK3-227ENST00000570296 KAT7O95251 611 aa19.51■□□□□ 0.71
CLK3-227ENST00000570296 APODP05090 189 aa19.51■□□□□ 0.71
CLK3-227ENST00000570296 ZNF883P0CG24 379 aa19.51■□□□□ 0.71
CLK3-227ENST00000570296 MUTP22033 750 aa19.51■□□□□ 0.71
CLK3-227ENST00000570296 ITPKBP27987 946 aa19.51■□□□□ 0.71
CLK3-227ENST00000570296 PSMA5P28066 241 aa19.51■□□□□ 0.71
CLK3-227ENST00000570296 EIF2DP41214 584 aaKnown RBP19.51■□□□□ 0.71
CLK3-227ENST00000570296 CDR1P51861 262 aa19.51■□□□□ 0.71
CLK3-227ENST00000570296 MARCH9Q86YJ5 346 aa19.51■□□□□ 0.71
CLK3-227ENST00000570296 TNFRSF25Q93038 417 aa19.51■□□□□ 0.71
CLK3-227ENST00000570296 TRMT2BQ96GJ1 504 aaKnown RBP19.51■□□□□ 0.71
CLK3-227ENST00000570296 YTHDC1Q96MU7 727 aaKnown RBP19.51■□□□□ 0.71
CLK3-227ENST00000570296 FCRL3Q96P31 734 aaPredicted RBP19.51■□□□□ 0.71
CLK3-227ENST00000570296 TSPAN18Q96SJ8 248 aa19.51■□□□□ 0.71
CLK3-227ENST00000570296 PNKPQ96T60 521 aa19.51■□□□□ 0.71
CLK3-227ENST00000570296 CALCOCO1Q9P1Z2 691 aa19.51■□□□□ 0.71
CLK3-227ENST00000570296 USP9XQ93008 2570 aaPredicted RBP19.51■□□□□ 0.71
CLK3-227ENST00000570296 IGHV1OR15-9A0A0B4J2B8 117 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 TEX51A0A1B0GUA7 166 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 PPEF2O14830 753 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 ZNF217O75362 1048 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 CDKL5O76039 1030 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 CLTAP09496 248 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 ATXN1LP0C7T5 689 aaKnown RBP19.5■□□□□ 0.71
CLK3-227ENST00000570296 GUCY2FP51841 1108 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 PPP2R3AQ06190 1150 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 NR5A1Q13285 461 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 TOB2Q14106 344 aaPredicted RBP19.5■□□□□ 0.71
CLK3-227ENST00000570296 SYCP2LQ5T4T6 812 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 LRRC69Q6ZNQ3 347 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 LRRTM3Q86VH5 581 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 SFTPA1Q8IWL2 248 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 THEM5Q8N1Q8 247 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 KIAA1958Q8N8K9 716 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 ZNF419Q96HQ0 510 aaPredicted RBP19.5■□□□□ 0.71
CLK3-227ENST00000570296 MYRFLQ96LU7 910 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 KMT5AQ9NQR1 393 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 GJB4Q9NTQ9 266 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 GCNT4Q9P109 453 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 ARHGAP26Q9UNA1 814 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 PCDHB5Q9Y5E4 795 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 TCHHQ07283 1943 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 MYOFQ9NZM1 2061 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 KNL1Q8NG31 2342 aa19.5■□□□□ 0.71
CLK3-227ENST00000570296 SCN1AP35498 2009 aa19.49■□□□□ 0.71
CLK3-227ENST00000570296 NOL4O94818 638 aa19.49■□□□□ 0.71
CLK3-227ENST00000570296 CYP17A1P05093 508 aa19.49■□□□□ 0.71
CLK3-227ENST00000570296 GABRG2P18507 467 aa19.49■□□□□ 0.71
CLK3-227ENST00000570296 KRT2P35908 639 aa19.49■□□□□ 0.71
CLK3-227ENST00000570296 EIF2S3P41091 472 aaKnown RBP19.49■□□□□ 0.71
CLK3-227ENST00000570296 TNFRSF4P43489 277 aa19.49■□□□□ 0.71
CLK3-227ENST00000570296 MCL1Q07820 350 aa19.49■□□□□ 0.71
CLK3-227ENST00000570296 EMC10Q5UCC4 262 aa19.49■□□□□ 0.71
CLK3-227ENST00000570296 METTL23Q86XA0 190 aa19.49■□□□□ 0.71
CLK3-227ENST00000570296 DCP1BQ8IZD4 617 aaKnown RBP19.49■□□□□ 0.71
CLK3-227ENST00000570296 RGL4Q8IZJ4 473 aa19.49■□□□□ 0.71
CLK3-227ENST00000570296 BHMT2Q9H2M3 363 aa19.49■□□□□ 0.71
CLK3-227ENST00000570296 HLA-EP13747 358 aa19.48■□□□□ 0.71
CLK3-227ENST00000570296 GRIA2P42262 883 aa19.48■□□□□ 0.71
CLK3-227ENST00000570296 MESP2Q0VG99 397 aa19.48■□□□□ 0.71
CLK3-227ENST00000570296 KCNB1Q14721 858 aa19.48■□□□□ 0.71
CLK3-227ENST00000570296 SMAD1Q15797 465 aaKnown RBP19.48■□□□□ 0.71
CLK3-227ENST00000570296 WDR45BQ5MNZ6 344 aa19.48■□□□□ 0.71
CLK3-227ENST00000570296 SPATA1Q5VX52 437 aa19.48■□□□□ 0.71
CLK3-227ENST00000570296 ZPBP2Q6X784 338 aa19.48■□□□□ 0.71
CLK3-227ENST00000570296 TRMT11Q7Z4G4 463 aaKnown RBP19.48■□□□□ 0.71
CLK3-227ENST00000570296 ARL14EPQ8N8R7 260 aaPredicted RBP19.48■□□□□ 0.71
CLK3-227ENST00000570296 KCNV2Q8TDN2 545 aa19.48■□□□□ 0.71
CLK3-227ENST00000570296 FOXJ1Q92949 421 aa19.48■□□□□ 0.71
CLK3-227ENST00000570296 DRC1Q96MC2 740 aa19.48■□□□□ 0.71
CLK3-227ENST00000570296 BRMS1Q9HCU9 246 aa19.48■□□□□ 0.71
CLK3-227ENST00000570296 PALM2-AKAP2B1ALY0 433 aaPredicted RBP19.47■□□□□ 0.71
CLK3-227ENST00000570296 CLDN3O15551 220 aa19.47■□□□□ 0.71
CLK3-227ENST00000570296 SLC6A11P48066 632 aa19.47■□□□□ 0.71
CLK3-227ENST00000570296 GPR15P49685 360 aa19.47■□□□□ 0.71
CLK3-227ENST00000570296 PDE6CP51160 858 aa19.47■□□□□ 0.71
CLK3-227ENST00000570296 STRN3Q13033 797 aa19.47■□□□□ 0.71
CLK3-227ENST00000570296 ZC2HC1CQ53FD0 456 aaPredicted RBP19.47■□□□□ 0.71
CLK3-227ENST00000570296 GPR155Q7Z3F1 870 aa19.47■□□□□ 0.71
CLK3-227ENST00000570296 STKLD1Q8NE28 680 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms