RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 PIH1D1Q9NWS0 290 aaKnown RBP15.17■□□□□ 0.02
VPS35-210ENST00000568784 WASF2Q9Y6W5 498 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 ARFGEF1Q9Y6D6 1849 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 ALOX15BO15296 676 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 CDH8P55286 799 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 GPX6P59796 221 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 OGDHQ02218 1023 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 PPP2R5DQ14738 602 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 NUDCD3Q8IVD9 361 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 SYT15Q9BQS2 421 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 PIDD1Q9HB75 910 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 PCDH9Q9HC56 1237 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 CISHQ9NSE2 258 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 hCG_1818297A0A087WSY0 165 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 DKC1O60832 514 aaKnown RBP eCLIP15.16■□□□□ 0.02
VPS35-210ENST00000568784 ATP6V1C1P21283 382 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 POLR2BP30876 1174 aaKnown RBP15.16■□□□□ 0.02
VPS35-210ENST00000568784 ACTR2P61160 394 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 MMRN1Q13201 1228 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 MOGSQ13724 837 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 TAF5Q15542 800 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 CHI3L2Q15782 390 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 WDR72Q3MJ13 1102 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 FOXP3Q9BZS1 431 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 PXMP2Q9NR77 195 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 SLC24A2Q9UI40 661 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 SHOC2Q9UQ13 582 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 TBXAS1P24557 533 aaPredicted RBP15.16■□□□□ 0.02
VPS35-210ENST00000568784 SERPINB6P35237 376 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 ACSBG2Q5FVE4 666 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 FAM102AQ5T9C2 384 aaPredicted RBP15.16■□□□□ 0.02
VPS35-210ENST00000568784 RNASEH2BQ5TBB1 312 aaKnown RBP15.16■□□□□ 0.02
VPS35-210ENST00000568784 OR6B2Q6IFH4 312 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 C4orf50Q6ZRC1 276 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 TEX9Q8N6V9 391 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 JOSD2Q8TAC2 188 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 NLRP4Q96MN2 994 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 NMUR2Q9GZQ4 415 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 RIPK3Q9Y572 518 aa15.16■□□□□ 0.02
VPS35-210ENST00000568784 LMNAP02545 664 aaKnown RBP15.15■□□□□ 0.02
VPS35-210ENST00000568784 ABHD2P08910 425 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 LINGO3P0C6S8 592 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 GARTP22102 1010 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 GCAP28676 217 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 LRRC74BQ6ZQY2 392 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 POU5F2Q8N7G0 328 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 WDR60Q8WVS4 1066 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 MIPEPQ99797 713 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 APOL6Q9BWW8 343 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 C2CD2Q9Y426 696 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 C2CD2LO14523 706 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 KCNN4O15554 427 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 CSDE1O75534 798 aaKnown RBP15.15■□□□□ 0.02
VPS35-210ENST00000568784 VNN1O95497 513 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 WASHC2DQ5SRD0 308 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 RINLQ6ZS11 566 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 PRPF39Q86UA1 669 aaKnown RBP15.15■□□□□ 0.02
VPS35-210ENST00000568784 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.15■□□□□ 0.02
VPS35-210ENST00000568784 CPT1BQ92523 772 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 XPNPEP1Q9NQW7 623 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 GINS2Q9Y248 185 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 CCDC189A1A4V9 331 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 PRPF4O43172 522 aaKnown RBP eCLIP15.15■□□□□ 0.02
VPS35-210ENST00000568784 TCEA3O75764 348 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 USP1O94782 785 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 CYP1A1P04798 512 aaPredicted RBP15.15■□□□□ 0.02
VPS35-210ENST00000568784 C1QBPQ07021 282 aaKnown RBP15.15■□□□□ 0.02
VPS35-210ENST00000568784 PLEKHA7Q6IQ23 1121 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 LRRC71Q8N4P6 559 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 UBA3Q8TBC4 463 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 ASAP3Q8TDY4 903 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 CLEC4DQ8WXI8 215 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 ZNF541Q9H0D2 1346 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 EP400Q96L91 3159 aa15.15■□□□□ 0.02
VPS35-210ENST00000568784 LOC100653049A0A140TA62 436 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 YDJCA8MPS7 323 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 CYB561D2O14569 222 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 GSC2O15499 205 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 KRT34O76011 436 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 TMEM63AO94886 807 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 CCDC15Q0P6D6 951 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 EFCAB3Q8N7B9 438 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 ZNF483Q8TF39 744 aaPredicted RBP15.14■□□□□ 0.01
VPS35-210ENST00000568784 SH3GL3Q99963 347 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 RABGEF1Q9UJ41 708 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 CLUHO75153 1309 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 TMEM191CA6NGB0 347 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 SPECC1L-ADORA2AF8WAN1 911 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 ZBED1O96006 694 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 RGS7P49802 495 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 HSD17B4P51659 736 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 AQP5P55064 265 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 SNRPFP62306 86 aaKnown RBP15.14■□□□□ 0.01
VPS35-210ENST00000568784 ROR1Q01973 937 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 PIGHQ14442 188 aaPredicted RBP15.14■□□□□ 0.01
VPS35-210ENST00000568784 RGS9BPQ6ZS82 235 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 PCGF5Q86SE9 256 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 WNK4Q96J92 1243 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 FGD4Q96M96 766 aa15.14■□□□□ 0.01
VPS35-210ENST00000568784 TIPINQ9BVW5 301 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms