RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 BLZF1Q9H2G9 400 aa17.2■□□□□ 0.34
CLN3-229ENST00000567963 UBE4BO95155 1302 aa17.2■□□□□ 0.34
CLN3-229ENST00000567963 ANAPC1Q9H1A4 1944 aa17.2■□□□□ 0.34
CLN3-229ENST00000567963 PVALEFA0A1B0GWK0 134 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 USP17L7P0C7H9 530 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 HOXA6P31267 233 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 ME1P48163 572 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 CYP2J2P51589 502 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 CYP24A1Q07973 514 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 GRSF1Q12849 480 aaKnown RBP eCLIP17.19■□□□□ 0.34
CLN3-229ENST00000567963 PSMD6Q15008 389 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 LPAL2Q16609 132 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 LAIR1Q6GTX8 287 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 VSTM1Q6UX27 236 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 PRR23BQ6ZRT6 265 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 XXYLT1Q8NBI6 393 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 MYLPFQ96A32 169 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 CCDC127Q96BQ5 260 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 SPATA17Q96L03 361 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 CGRRF1Q99675 332 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 TRPC7Q9HCX4 862 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 SLC39A2Q9NP94 309 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 FAM13BQ9NYF5 915 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 CACNA1AO00555 2505 aa17.19■□□□□ 0.34
CLN3-229ENST00000567963 TRAV19A0A0A6YYK7 116 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 TACC1O75410 805 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 HSP90AA1P07900 732 aaKnown RBP17.18■□□□□ 0.34
CLN3-229ENST00000567963 FAM163BP0C2L3 166 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 ARSAP15289 507 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 BDNFP23560 247 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 GNL1P36915 607 aaPredicted RBP17.18■□□□□ 0.34
CLN3-229ENST00000567963 GRIK1P39086 918 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 AMPD2Q01433 879 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 CUL4BQ13620 913 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 SIM2Q14190 667 aaPredicted RBP17.18■□□□□ 0.34
CLN3-229ENST00000567963 PDGFRLQ15198 375 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 BMT2Q1RMZ1 405 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 RESP18Q5W5W9 173 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 HEATR6Q6AI08 1181 aaKnown RBP17.18■□□□□ 0.34
CLN3-229ENST00000567963 ATL3Q6DD88 541 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 FSTL4Q6MZW2 842 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 HS2ST1Q7LGA3 356 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 HSCBQ8IWL3 235 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 MYCBPAPQ8TBZ2 947 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 PCED1BQ96HM7 432 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 CEP295NLQ96MC4 621 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 MRPL45Q9BRJ2 306 aaKnown RBP17.18■□□□□ 0.34
CLN3-229ENST00000567963 GCNT4Q9P109 453 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 CGNQ9P2M7 1197 aaKnown RBP17.18■□□□□ 0.34
CLN3-229ENST00000567963 CEP250Q9BV73 2442 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 PTPRDP23468 1912 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 C2orf78A6NCI8 922 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 CKMP06732 381 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 HOXC13P31276 330 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 AFMP43652 599 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 CYP27A1Q02318 531 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 SRSF5Q13243 272 aaKnown RBP17.18■□□□□ 0.34
CLN3-229ENST00000567963 MTF1Q14872 753 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 ZNF77Q15935 545 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 KNOP1Q1ED39 458 aaKnown RBP17.18■□□□□ 0.34
CLN3-229ENST00000567963 WDR72Q3MJ13 1102 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 PKN3Q6P5Z2 889 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 C12orf56Q8IXR9 622 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 ARL14EPQ8N8R7 260 aaPredicted RBP17.18■□□□□ 0.34
CLN3-229ENST00000567963 OSCP1Q8WVF1 389 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 ZNF516Q92618 1163 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 GZF1Q9H116 711 aaPredicted RBP17.18■□□□□ 0.34
CLN3-229ENST00000567963 SNX25Q9H3E2 840 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 ECT2Q9H8V3 914 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 FBRSL1Q9HCM7 1045 aaKnown RBP17.18■□□□□ 0.34
CLN3-229ENST00000567963 PARD6AQ9NPB6 346 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 DUS2Q9NX74 493 aaKnown RBP17.18■□□□□ 0.34
CLN3-229ENST00000567963 CFAP45Q9UL16 551 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 USP18Q9UMW8 372 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 NME7Q9Y5B8 376 aa17.18■□□□□ 0.34
CLN3-229ENST00000567963 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.17■□□□□ 0.34
CLN3-229ENST00000567963 PRR5-ARHGAP8B1AHC4 643 aa17.17■□□□□ 0.34
CLN3-229ENST00000567963 RETP07949 1114 aa17.17■□□□□ 0.34
CLN3-229ENST00000567963 HDCP19113 662 aa17.17■□□□□ 0.34
CLN3-229ENST00000567963 SDHBP21912 280 aa17.17■□□□□ 0.34
CLN3-229ENST00000567963 GJA4P35212 333 aa17.17■□□□□ 0.34
CLN3-229ENST00000567963 GALK1P51570 392 aa17.17■□□□□ 0.34
CLN3-229ENST00000567963 ARHGAP8P85298 464 aa17.17■□□□□ 0.34
CLN3-229ENST00000567963 LMNB2Q03252 620 aa17.17■□□□□ 0.34
CLN3-229ENST00000567963 PKP1Q13835 747 aa17.17■□□□□ 0.34
CLN3-229ENST00000567963 DENND5BQ6ZUT9 1274 aa17.17■□□□□ 0.34
CLN3-229ENST00000567963 WDR5BQ86VZ2 330 aa17.17■□□□□ 0.34
CLN3-229ENST00000567963 OR6B3Q8NGW1 331 aa17.17■□□□□ 0.34
CLN3-229ENST00000567963 ATG2BQ96BY7 2078 aa17.16■□□□□ 0.34
CLN3-229ENST00000567963 TRIM66O15016 1216 aa17.16■□□□□ 0.34
CLN3-229ENST00000567963 ATG13O75143 517 aa17.16■□□□□ 0.34
CLN3-229ENST00000567963 STAU1O95793 577 aaKnown RBP17.16■□□□□ 0.34
CLN3-229ENST00000567963 EGFP01133 1207 aa17.16■□□□□ 0.34
CLN3-229ENST00000567963 DRD1P21728 446 aa17.16■□□□□ 0.34
CLN3-229ENST00000567963 ANXA13P27216 316 aa17.16■□□□□ 0.34
CLN3-229ENST00000567963 USP46P62068 366 aa17.16■□□□□ 0.34
CLN3-229ENST00000567963 TNNC1P63316 161 aa17.16■□□□□ 0.34
CLN3-229ENST00000567963 SPEM2Q0P670 501 aa17.16■□□□□ 0.34
CLN3-229ENST00000567963 USP4Q13107 963 aa17.16■□□□□ 0.34
CLN3-229ENST00000567963 KCNB1Q14721 858 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms