RNA–Protein interactions for RNA: ENST00000565173.1

CAPN3-213, Transcript of calpain 3, humanhuman

TSL 4

Gene CAPN3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-213ENST00000565173 SHC4Q6S5L8 630 aa9.19□□□□□ -0.94
CAPN3-213ENST00000565173 PRR23CQ6ZRP0 262 aa9.19□□□□□ -0.94
CAPN3-213ENST00000565173 WDR49Q8IV35 697 aa9.19□□□□□ -0.94
CAPN3-213ENST00000565173 NETO1Q8TDF5 533 aa9.19□□□□□ -0.94
CAPN3-213ENST00000565173 NOC3LQ8WTT2 800 aaKnown RBP9.19□□□□□ -0.94
CAPN3-213ENST00000565173 MYLPFQ96A32 169 aa9.19□□□□□ -0.94
CAPN3-213ENST00000565173 ANKRD36BP1Q96IX9 119 aa9.19□□□□□ -0.94
CAPN3-213ENST00000565173 SPATA17Q96L03 361 aa9.19□□□□□ -0.94
CAPN3-213ENST00000565173 SYT15Q9BQS2 421 aa9.19□□□□□ -0.94
CAPN3-213ENST00000565173 LINC00597Q9H2U6 94 aa9.19□□□□□ -0.94
CAPN3-213ENST00000565173 ECT2Q9H8V3 914 aa9.19□□□□□ -0.94
CAPN3-213ENST00000565173 TRPC7Q9HCX4 862 aa9.19□□□□□ -0.94
CAPN3-213ENST00000565173 FOXD4L1Q9NU39 408 aa9.19□□□□□ -0.94
CAPN3-213ENST00000565173 TFIP11Q9UBB9 837 aaKnown RBP9.19□□□□□ -0.94
CAPN3-213ENST00000565173 CDH9Q9ULB4 789 aa9.19□□□□□ -0.94
CAPN3-213ENST00000565173 WDFY3Q8IZQ1 3526 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 TRAV19A0A0A6YYK7 116 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 SPTLC2O15270 562 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 EIF3DO15371 548 aaKnown RBP eCLIP9.18□□□□□ -0.94
CAPN3-213ENST00000565173 ATG13O75143 517 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 RNF40O75150 1001 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 PDGFRBP09619 1106 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 TCF3P15923 654 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 DRD1P21728 446 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 WARSP23381 471 aaKnown RBP9.18□□□□□ -0.94
CAPN3-213ENST00000565173 BDNFP23560 247 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 PSMC1P62191 440 aaKnown RBP9.18□□□□□ -0.94
CAPN3-213ENST00000565173 STK38Q15208 465 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 SURF1Q15526 300 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 SNRNP35Q16560 246 aaKnown RBP9.18□□□□□ -0.94
CAPN3-213ENST00000565173 GAB4Q2WGN9 574 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 GREB1Q4ZG55 1949 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 CC2D1AQ6P1N0 951 aaPredicted RBP9.18□□□□□ -0.94
CAPN3-213ENST00000565173 VSTM1Q6UX27 236 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 TRAPPC11Q7Z392 1133 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.18□□□□□ -0.94
CAPN3-213ENST00000565173 KBTBD6Q86V97 674 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 SCN4BQ8IWT1 228 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 CAMKK1Q8N5S9 505 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 ARL14EPQ8N8R7 260 aaPredicted RBP9.18□□□□□ -0.94
CAPN3-213ENST00000565173 RDH13Q8NBN7 331 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 MYCBPAPQ8TBZ2 947 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 SH3RF2Q8TEC5 729 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 SCFD1Q8WVM8 642 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 GAB3Q8WWW8 586 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 ZNF516Q92618 1163 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 PCED1BQ96HM7 432 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 LOXL4Q96JB6 756 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 ZC3H10Q96K80 434 aaKnown RBP9.18□□□□□ -0.94
CAPN3-213ENST00000565173 CEP295NLQ96MC4 621 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 P2RY13Q9BPV8 354 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 C7orf25Q9BPX7 421 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 MRPL45Q9BRJ2 306 aaKnown RBP9.18□□□□□ -0.94
CAPN3-213ENST00000565173 TTLL2Q9BWV7 592 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 ANAPC1Q9H1A4 1944 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 CUEDC2Q9H467 287 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 EPG5Q9HCE0 2579 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 KIAA1586Q9HCI6 787 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 AGPAT3Q9NRZ7 376 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 RXFP3Q9NSD7 469 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 TMEM30AQ9NV96 361 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 DUS2Q9NX74 493 aaKnown RBP9.18□□□□□ -0.94
CAPN3-213ENST00000565173 MAGEC2Q9UBF1 373 aaPredicted RBP9.18□□□□□ -0.94
CAPN3-213ENST00000565173 ARHGAP26Q9UNA1 814 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 WNT6Q9Y6F9 365 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 FRYQ5TBA9 3013 aa9.18□□□□□ -0.94
CAPN3-213ENST00000565173 ZNF638Q14966 1978 aaKnown RBP9.17□□□□□ -0.94
CAPN3-213ENST00000565173 CFAP47Q6ZTR5 3102 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 ZNF840PA6NDX5 716 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 ANTXRLA6NF34 631 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 K7ELQ4 463 aaPredicted RBP9.17□□□□□ -0.94
CAPN3-213ENST00000565173 TM4SF5O14894 197 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 AXIN1O15169 862 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 TACC1O75410 805 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 RPP40O75818 363 aaKnown RBP9.17□□□□□ -0.94
CAPN3-213ENST00000565173 TNNC2P02585 160 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 CKMP06732 381 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 FAM163BP0C2L3 166 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 HDCP19113 662 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 CASP1P29466 404 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 GNL1P36915 607 aaPredicted RBP9.17□□□□□ -0.94
CAPN3-213ENST00000565173 GRIK1P39086 918 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 CACNA2D1P54289 1103 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 NOP14P78316 857 aaKnown RBP9.17□□□□□ -0.94
CAPN3-213ENST00000565173 AMPD2Q01433 879 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 CYP24A1Q07973 514 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 PSMD6Q15008 389 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 MAPRE1Q15691 268 aaKnown RBP9.17□□□□□ -0.94
CAPN3-213ENST00000565173 CCDC6Q16204 474 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 FBXO43Q4G163 708 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 PLA2G2CQ5R387 149 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 C4orf50Q6ZRC1 276 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 STXBP4Q6ZWJ1 553 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 CEP68Q76N32 757 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 SYT13Q7L8C5 426 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 CACNA2D4Q7Z3S7 1137 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 CPA6Q8N4T0 437 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 FSIP1Q8NA03 581 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 CD101Q93033 1021 aa9.17□□□□□ -0.94
CAPN3-213ENST00000565173 ATP2A3Q93084 1043 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms