RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 KLF1Q13351 362 aaPredicted RBP7.9□□□□□ -1.14
VPS39-204ENST00000561818 KCNA10Q16322 511 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 GOLGA7BQ2TAP0 167 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 PTPN20Q4JDL3 420 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 ZNF394Q53GI3 561 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 UBXN11Q5T124 520 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 TMEM63BQ5T3F8 832 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 FAM102AQ5T9C2 384 aaPredicted RBP7.9□□□□□ -1.14
VPS39-204ENST00000561818 DCAF12L1Q5VU92 463 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 CCSAPQ6IQ19 270 aaPredicted RBP7.9□□□□□ -1.14
VPS39-204ENST00000561818 GLB1LQ6UWU2 654 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 CXCL17Q6UXB2 119 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 C4orf50Q6ZRC1 276 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 PDZD4Q76G19 769 aaPredicted RBP7.9□□□□□ -1.14
VPS39-204ENST00000561818 XYLT1Q86Y38 959 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 RELL1Q8IUW5 271 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 GPIHBP1Q8IV16 184 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 TMEM192Q8IY95 271 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 RIBC1Q8N443 379 aaPredicted RBP7.9□□□□□ -1.14
VPS39-204ENST00000561818 PRELID2Q8N945 189 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 B3GALNT2Q8NCR0 500 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.9□□□□□ -1.14
VPS39-204ENST00000561818 IFT81Q8WYA0 676 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 IRGQQ8WZA9 623 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 NKD2Q969F2 451 aaPredicted RBP7.9□□□□□ -1.14
VPS39-204ENST00000561818 DCBLD2Q96PD2 775 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 SLC9A7Q96T83 725 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 HNRNPABQ99729 332 aaKnown RBP7.9□□□□□ -1.14
VPS39-204ENST00000561818 ZNF670Q9BS34 389 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 BEGAINQ9BUH8 593 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 AP1M1Q9BXS5 423 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 EIF2AQ9BY44 585 aaKnown RBP7.9□□□□□ -1.14
VPS39-204ENST00000561818 MRPL9Q9BYD2 267 aaKnown RBP7.9□□□□□ -1.14
VPS39-204ENST00000561818 ELOVL4Q9GZR5 314 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.9□□□□□ -1.14
VPS39-204ENST00000561818 DDX47Q9H0S4 455 aaKnown RBP7.9□□□□□ -1.14
VPS39-204ENST00000561818 ERVK-5Q9HDB9 667 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 DMGDHQ9UI17 866 aaKnown RBP7.9□□□□□ -1.14
VPS39-204ENST00000561818 HPCAL4Q9UM19 191 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 ST3GAL5Q9UNP4 418 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 RAD54BQ9Y620 910 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 THSD7BQ9C0I4 1608 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 GOLGA6CA6NDK9 693 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 SRRM3A6NNA2 597 aaPredicted RBP7.89□□□□□ -1.15
VPS39-204ENST00000561818 APOC4-APOC2K7ER74 178 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 DNM1LO00429 736 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 GABRDO14764 452 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 MCF2LO15068 1137 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 EIF3HO15372 352 aaKnown RBP eCLIP7.89□□□□□ -1.15
VPS39-204ENST00000561818 ATMINO43313 823 aaPredicted RBP7.89□□□□□ -1.15
VPS39-204ENST00000561818 PPFIA2O75334 1257 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 APOC2P02655 101 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 NUDT17P0C025 328 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 FAM200BP0CF97 657 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 GOLGA6DP0CG33 693 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 RARGP13631 454 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 TSHRP16473 764 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 NPR3P17342 541 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 OAS2P29728 719 aaKnown RBP7.89□□□□□ -1.15
VPS39-204ENST00000561818 CYP2C18P33260 490 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 THPOP40225 353 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 TSPY1Q01534 308 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 SLC6A3Q01959 620 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 ADCY2Q08462 1091 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 IFFO1Q0D2I5 559 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 TUSC3Q13454 348 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 BYSLQ13895 437 aaKnown RBP7.89□□□□□ -1.15
VPS39-204ENST00000561818 PKDCCQ504Y2 493 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 DENND2CQ68D51 928 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 GDF6Q6KF10 455 aaPredicted RBP7.89□□□□□ -1.15
VPS39-204ENST00000561818 CYP4F22Q6NT55 531 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 DENND1BQ6P3S1 775 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 DSTYKQ6XUX3 929 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 BBS12Q6ZW61 710 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 SLC24A5Q71RS6 500 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 GSTA5Q7RTV2 222 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 SIX6OS1Q8N1H7 587 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 CMASQ8NFW8 434 aaPredicted RBP7.89□□□□□ -1.15
VPS39-204ENST00000561818 FAM76AQ8TAV0 307 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 SLC35F5Q8WV83 523 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 TFAP2BQ92481 460 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 KRT35Q92764 455 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 SMARCD1Q96GM5 515 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 CCDC114Q96M63 670 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 PPP1R2P1Q96PQ5 205 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 SLITRK1Q96PX8 696 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 SH3GL2Q99962 352 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 ACBD6Q9BR61 282 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 ROPN1BQ9BZX4 212 aaPredicted RBP7.89□□□□□ -1.15
VPS39-204ENST00000561818 DCLK3Q9C098 648 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 ARHGAP39Q9C0H5 1083 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 BRD8Q9H0E9 1235 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 CNOT10Q9H9A5 744 aaKnown RBP7.89□□□□□ -1.15
VPS39-204ENST00000561818 ROPN1Q9HAT0 212 aaPredicted RBP7.89□□□□□ -1.15
VPS39-204ENST00000561818 LRRC4Q9HBW1 653 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 PCDH9Q9HC56 1237 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 CNGB3Q9NQW8 809 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.89□□□□□ -1.15
VPS39-204ENST00000561818 STARD7Q9NQZ5 370 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 ST7Q9NRC1 585 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms